Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 1213 experiments or choose conditions or try the comparative fitness browser

500 ntPFLU_RS07950 and PFLU_RS07955 are separated by 176 nucleotidesPFLU_RS07955 and PFLU_RS07960 are separated by 7 nucleotidesPFLU_RS07960 and PFLU_RS31460 are separated by 70 nucleotidesPFLU_RS31460 and PFLU_RS07965 overlap by 4 nucleotides PFLU_RS07950: PFLU_RS07950 - LysR family transcriptional regulator, at 1,773,000 to 1,773,896 _RS07950 PFLU_RS07955: PFLU_RS07955 - BcpO-related WXXGXW repeat protein, at 1,774,073 to 1,774,402 _RS07955 PFLU_RS07960: PFLU_RS07960 - hypothetical protein, at 1,774,410 to 1,774,784 _RS07960 PFLU_RS31460: PFLU_RS31460 - type II toxin-antitoxin system VapC family toxin, at 1,774,855 to 1,774,987 _RS31460 PFLU_RS07965: PFLU_RS07965 - AbrB/MazE/SpoVT family DNA-binding domain-containing protein, at 1,774,984 to 1,775,241 _RS07965
Group Condition PFLU_RS07950 PFLU_RS07955 PFLU_RS07960 PFLU_RS31460 PFLU_RS07965
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.2 +0.1 -2.6 -0.8 N.D.
stress Betaine (C)(N); with MOPS; with chloride -0.8 +0.0 -0.7 -1.3 N.D.
pH Growth at pH9 and (C) Trisodium citrate -0.1 +0.1 -2.1 +0.0 N.D.
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.1 -0.2 -1.5 -0.3 N.D.
carbon source L-Carnitine (C) +0.2 -0.1 -1.3 -0.5 N.D.
stress Betaine (C)(N); with TAPS; with chloride +0.1 +0.0 -1.6 -0.0 N.D.
carbon source Phloretic Acid 2 mM (C) -0.2 +0.2 -0.4 -1.0 N.D.
stress Betaine (C)(N); with TAPS; with chloride -0.0 +0.3 -1.6 -0.2 N.D.
carbon source L-Valine (C) +0.4 -0.0 -1.0 -0.7 N.D.
carbon source 4-Guanidinobutyric (C) +0.3 +0.2 -1.7 -0.2 N.D.
carbon source Phloretic Acid 2 mM (C) +0.1 -0.4 -1.1 +0.1 N.D.
carbon source D-Galactose (C) +0.2 -0.2 -1.0 -0.3 N.D.
stress Growth with Chloride 200 mM +0.2 +0.0 -1.0 -0.4 N.D.
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.2 +0.0 -1.3 -0.0 N.D.
no stress control Glucose (C) and Glycine betaine (N); with TAPS +0.1 +0.2 -0.8 -0.4 N.D.
pH Growth at pH7 and (C) D-Glucose +0.2 -0.2 +0.2 -1.0 N.D.
carbon source 4-hydroxyphenylacetic 2 mM (C) +0.1 -0.1 -1.1 +0.3 N.D.
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS +0.2 +0.0 -1.2 +0.3 N.D.
no stress control Glycine betaine (C)(N); with TAPS +0.0 +0.1 +0.6 -1.3 N.D.
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.2 -0.2 +0.5 -1.0 N.D.
carbon and nitrogen source NAG carbon and (N) +0.4 +0.2 -0.4 -0.7 N.D.
carbon source acetate 30 mM (C) +0.2 -0.0 -0.8 +0.5 N.D.
carbon source Inosine (C) +0.2 +0.3 -1.0 +0.5 N.D.
carbon source 4-Acetoxy-3-methoxycinnamic 2 mM (C) +0.2 -0.1 -0.5 +0.7 N.D.
pH Growth at pH9 and (C) Trisodium citrate +0.3 -0.1 -0.5 +0.8 N.D.
carbon source Inosine (C) -0.2 -0.3 +0.8 +0.2 N.D.
carbon source Sucrose 5 mM (C) +0.5 -0.1 +0.6 +0.6 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.3 +0.4 +0.9 +0.7 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.0 +0.1 +1.3 +0.2 N.D.
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.3 +0.0 +1.0 +0.6 N.D.
remove
PFLU_RS07950
plot		 remove
PFLU_RS07955
plot		 remove
PFLU_RS07960		 remove
PFLU_RS31460
plot		 remove
PFLU_RS07965
plot