Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS07460 and PFLU_RS07465 are separated by 122 nucleotidesPFLU_RS07465 and PFLU_RS07470 overlap by 4 nucleotidesPFLU_RS07470 and PFLU_RS07475 are separated by 107 nucleotidesPFLU_RS07475 and PFLU_RS07480 are separated by 125 nucleotides PFLU_RS07460: PFLU_RS07460 - class I SAM-dependent methyltransferase, at 1,661,730 to 1,662,329 _RS07460 PFLU_RS07465: PFLU_RS07465 - ribonuclease D, at 1,662,452 to 1,663,585 _RS07465 PFLU_RS07470: PFLU_RS07470 - hypothetical protein, at 1,663,582 to 1,663,875 _RS07470 PFLU_RS07475: PFLU_RS07475 - D-2-hydroxyacid dehydrogenase, at 1,663,983 to 1,664,915 _RS07475 PFLU_RS07480: PFLU_RS07480 - nitroreductase family protein, at 1,665,041 to 1,665,625 _RS07480
Group Condition PFLU_RS07460 PFLU_RS07465 PFLU_RS07470 PFLU_RS07475 PFLU_RS07480
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.9 -0.8 -0.2 -0.2 -1.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.6 -2.7 +0.3 +0.2 +0.2
carbon source Xanthosine (C) -0.6 +0.3 -0.3 -0.1 -1.8
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.9 -0.4 -0.7 +0.3 -0.5
carbon source Quinic Acid (C) -0.6 -1.0 -0.1 +0.2 -0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.2 -0.5 -0.1 +0.4 -1.5
pH Growth at pH8 and (C) D-Glucose +0.4 -1.3 +0.2 -0.3 -0.5
carbon source L-Ornithine 10 mM (C) +0.6 -1.3 +0.0 +0.2 -0.8
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.7 -1.2 -0.1 +0.4 +0.4
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.3 -1.3 -0.1 +0.6 -0.5
stress Betaine (C)(N); with MOPS; with chloride -0.8 +0.5 +0.5 -0.5 -0.7
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.5 -0.5 +0.1 +0.7 -1.4
carbon source Choline chloride 10 mM (C) +0.7 -0.2 +0.2 -0.1 -1.3
carbon source Shikimic Acid (C) +0.3 -1.6 +0.1 -0.3 +1.1
carbon source propionate 20 mM (C) +0.4 -0.8 +0.6 -0.1 -0.6
carbon source NAG (C) +1.0 -0.5 +0.2 -0.1 -0.7
carbon source L-Valine 10 mM (C) +0.8 -0.2 +0.5 -0.2 -0.8
carbon source Ferulic Acid (C) 1.5 mM -0.4 +1.5 -0.1 -0.3 -0.4
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.3 +1.3 +0.1 +0.2 -0.8
carbon source p-Coumaric 2 mM (C) +0.3 +1.0 -0.3 +0.4 -0.9
carbon source p-Coumaric (C) 5 mM -1.7 +2.3 +0.6 +0.3 -0.8
no stress control Ferulic (C) and Ammonium chloride (N); with MOPS -1.2 +1.6 +0.2 +0.3 +0.2
carbon source Ferulic Acid (C) 1.5 mM -0.4 +2.0 +0.1 +0.1 -0.7
carbon source p-Coumaric 2 mM (C) -0.1 +1.8 +0.2 -0.0 -0.8
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.2 +1.2 +0.4 +0.5 -0.4
carbon source p-Coumaric (C) 5 mM -0.6 +1.9 -0.0 +0.2 -0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.4 +2.0 -0.0 -0.0 +0.1
stress Betaine (C)(N); with MOPS; with chloride +0.4 -0.3 +0.2 +0.5 +1.4
carbon source p-Coumaric (C) 5 mM -0.3 +2.4 +0.7 +0.2 -0.5
carbon source p-Coumaric (C) 5 mM -0.7 +2.2 +0.6 +0.7 -0.4
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