Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS07350 and PFLU_RS07355 overlap by 4 nucleotidesPFLU_RS07355 and PFLU_RS07360 are separated by 67 nucleotidesPFLU_RS07360 and PFLU_RS07365 are separated by 63 nucleotidesPFLU_RS07365 and PFLU_RS07370 are separated by 73 nucleotides PFLU_RS07350: PFLU_RS07350 - GntR family transcriptional regulator, at 1,635,731 to 1,636,453 _RS07350 PFLU_RS07355: PFLU_RS07355 - SDR family oxidoreductase, at 1,636,450 to 1,637,238 _RS07355 PFLU_RS07360: PFLU_RS07360 - 3-keto-5-aminohexanoate cleavage protein, at 1,637,306 to 1,638,238 _RS07360 PFLU_RS07365: PFLU_RS07365 - SMP-30/gluconolactonase/LRE family protein, at 1,638,302 to 1,639,180 _RS07365 PFLU_RS07370: PFLU_RS07370 - MFS transporter, at 1,639,254 to 1,640,576 _RS07370
Group Condition PFLU_RS07350 PFLU_RS07355 PFLU_RS07360 PFLU_RS07365 PFLU_RS07370
carbon source 2-Deoxy-D-Ribose 10 mM (C) -1.4 -2.7 -1.7 -0.5 +2.5
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.5 -1.8 -2.3 -1.6 +2.6
stress Betaine (C)(N); with MOPS; with chloride -0.9 -1.5 -0.2 +0.2 +0.1
stress Glucose (C) and Betaine (N); with TAPS; with chloride -1.3 -0.8 +0.2 -0.2 -0.0
carbon source 4-Guanidinobutyric (C) -0.8 -0.8 +0.5 -0.6 +0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.2 -0.8 -0.3 -0.4 -0.3
stress Betaine (C)(N); with TAPS; with chloride -0.4 -0.6 -0.6 +0.1 +0.0
stress Betaine (C)(N); with TAPS; with chloride -1.4 +0.1 -0.1 +0.1 -0.2
carbon source Xanthosine (C) -0.3 -0.9 -0.3 +0.1 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -1.4 +0.4 -0.6 -0.0 +0.2
carbon source propionate 20 mM (C) +0.3 -0.9 -0.1 -0.3 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.8 -1.0 +0.6 +0.2 -0.2
carbon source L-Carnitine (C) -0.6 -0.6 -0.2 +0.3 -0.2
carbon source L-Valine 10 mM (C) -0.2 -0.9 -0.2 +0.3 -0.2
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -1.5 +0.3 +0.1 -0.1 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.2 -0.2 -0.3 -0.1 +0.8
stress Betaine (C)(N); with TAPS; with chloride -1.2 +0.2 -0.4 -0.0 +0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.5 -0.7 -0.2 +0.5 -0.0
stress Betaine (C)(N); with MOPS; with chloride -0.6 -0.8 +0.1 +0.4 +0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.1 -0.7 -0.4 -0.1 +0.5
no stress control Glycine betaine (C)(N); with MOPS +0.3 +0.1 +0.1 -1.4 +0.1
pH Growth at pH9 and (C) Trisodium citrate +0.4 -0.9 -0.1 -0.3 +0.5
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.7 -0.5 +0.1 +0.8 -0.0
carbon source Shikimic Acid (C) -0.7 +0.5 -0.2 +0.2 +0.1
stress Glucose (C) and Betaine (N); with TAPS; with chloride -0.8 +0.5 +0.3 +0.0 +0.2
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.5 +0.3 -0.5 -0.5 +0.3
carbon source Phloretic Acid 2 mM (C) +0.6 +0.9 -0.2 +0.1 -0.3
carbon source Sucrose 5 mM (C) -0.1 +0.8 +0.5 +0.4 -0.3
carbon source acetate (C) +0.5 +0.6 +0.2 +0.4 -0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.8 +0.6 +0.2 -0.1 +0.3
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