Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS07335 and PFLU_RS07340 overlap by 9 nucleotidesPFLU_RS07340 and PFLU_RS07345 overlap by 1 nucleotidesPFLU_RS07345 and PFLU_RS07350 are separated by 247 nucleotidesPFLU_RS07350 and PFLU_RS07355 overlap by 4 nucleotides PFLU_RS07335: PFLU_RS07335 - LysR family transcriptional regulator, at 1,632,527 to 1,633,429 _RS07335 PFLU_RS07340: PFLU_RS07340 - ABC transporter substrate-binding protein, at 1,633,421 to 1,634,179 _RS07340 PFLU_RS07345: PFLU_RS07345 - MFS transporter, at 1,634,179 to 1,635,483 _RS07345 PFLU_RS07350: PFLU_RS07350 - GntR family transcriptional regulator, at 1,635,731 to 1,636,453 _RS07350 PFLU_RS07355: PFLU_RS07355 - SDR family oxidoreductase, at 1,636,450 to 1,637,238 _RS07355
Group Condition PFLU_RS07335 PFLU_RS07340 PFLU_RS07345 PFLU_RS07350 PFLU_RS07355
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.1 -0.0 +0.1 -1.4 -2.7
stress Betaine (C)(N); with MOPS; with chloride -0.3 -0.2 -0.3 -0.9 -1.5
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.2 -0.5 +0.3 -0.5 -1.8
stress Glucose (C) and Betaine (N); with TAPS; with chloride +0.0 +0.1 -0.1 -1.3 -0.8
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS -0.0 -0.2 -0.1 -0.4 -1.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.1 +0.1 -0.2 -1.2 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.1 +0.1 -0.1 -0.8 -1.0
stress Betaine (C)(N); with TAPS; with chloride -0.2 +0.1 -0.1 -1.4 +0.1
carbon source Trisodium citrate (C) -0.4 -0.1 -1.8 +0.5 +0.3
carbon source Trisodium citrate (C) -0.5 -0.4 -1.7 +0.7 +0.5
stress Betaine (C)(N); with MOPS; with chloride -0.2 +0.1 +0.1 -0.6 -0.8
carbon source 4-Guanidinobutyric (C) -0.1 +0.5 -0.2 -0.8 -0.8
carbon source L-Carnitine (C) -0.2 +0.4 -0.1 -0.6 -0.6
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.1 -0.1 +0.0 -1.4 +0.4
carbon source Trisodium citrate (C) -0.4 -0.5 -1.4 +0.6 +0.5
stress Betaine (C)(N); with TAPS; with chloride -0.1 -0.1 +0.1 -1.2 +0.2
pH Growth at pH9 and (C) Trisodium citrate -0.7 +0.1 +0.2 +0.4 -0.9
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.2 +0.1 -0.0 -1.5 +0.3
carbon source trans-aconitic (C) -0.1 -0.2 -1.2 +0.3 +0.3
pH Growth at pH6 and (C) Trisodium citrate -0.1 -0.3 -0.9 +0.3 +0.2
carbon source trans-aconitic 5 mM (C) +0.3 -0.4 -1.2 +0.2 +0.4
pH Growth at pH6 and (C) Trisodium citrate -0.3 -0.2 -0.9 +0.2 +0.4
carbon source trans-aconitic 5 mM (C) +0.2 -0.2 -1.0 +0.2 +0.2
carbon source trans-aconitic 5 mM (C) +0.3 -0.5 -1.1 +0.5 +0.2
pH Growth at pH7 and (C) Trisodium citrate -0.2 -0.1 -0.9 +0.3 +0.4
carbon source Quinic Acid (C) +0.4 +0.1 -0.3 -0.6 +0.5
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.3 -0.1 -0.2 +0.4 +0.7
carbon source Phloretic Acid 2 mM (C) +0.1 +0.1 -0.1 +0.6 +0.9
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.3 +0.1 -0.1 +0.8 +0.6
carbon source Phloretic Acid 2 mM (C) +0.3 +0.2 +0.4 +0.5 +0.3
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