Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS07105 and PFLU_RS07110 are separated by 136 nucleotidesPFLU_RS07110 and PFLU_RS07115 are separated by 158 nucleotidesPFLU_RS07115 and PFLU_RS07120 are separated by 315 nucleotidesPFLU_RS07120 and PFLU_RS07125 are separated by 304 nucleotides PFLU_RS07105: PFLU_RS07105 - enoyl-CoA hydratase/isomerase family protein, at 1,581,504 to 1,582,616 _RS07105 PFLU_RS07110: PFLU_RS07110 - uracil-DNA glycosylase, at 1,582,753 to 1,583,445 _RS07110 PFLU_RS07115: PFLU_RS07115 - hypothetical protein, at 1,583,604 to 1,585,559 _RS07115 PFLU_RS07120: PFLU_RS07120 - hypothetical protein, at 1,585,875 to 1,587,893 _RS07120 PFLU_RS07125: PFLU_RS07125 - autotransporter outer membrane beta-barrel domain-containing protein, at 1,588,198 to 1,590,387 _RS07125
Group Condition PFLU_RS07105 PFLU_RS07110 PFLU_RS07115 PFLU_RS07120 PFLU_RS07125
carbon source propionate 20 mM (C) -1.9 +0.3 -0.2 -0.2 +0.0
carbon source 4-Hydroxybenzoic Acid 2 mM (C) -1.1 -0.1 +0.0 +0.1 -0.1
carbon source propionate 20 mM (C) -1.6 +0.5 +0.1 -0.0 -0.1
stress Betaine (C)(N); with MOPS; with chloride -0.7 -0.2 -0.1 -0.1 +0.1
carbon source propionate (C) -0.9 +0.1 +0.1 -0.0 -0.0
carbon source L-Valine 10 mM (C) -0.6 -0.1 +0.1 -0.2 +0.1
temperature Growth at 25C +0.1 -0.8 -0.1 -0.1 +0.2
stress Betaine (C)(N); with MOPS; with chloride +0.3 -0.3 -0.2 -0.2 -0.2
carbon source propionate 20 mM (C) -1.3 +0.3 +0.0 +0.2 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.3 -0.3 +0.2 -0.3 +0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.3 -0.5 -0.0 -0.3 -0.1
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.2 -0.4 +0.1 -0.3 -0.2
carbon source 4-Hydroxybenzoic Acid 2 mM (C) -0.3 -0.4 +0.1 +0.3 +0.0
temperature shift Temperature shift 30_to_25; with MOPS -0.6 +0.2 -0.1 +0.2 +0.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.6 -0.6 -0.0 -0.1 -0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.9 +0.3 -0.0 +0.4 +0.2
stress Betaine (C)(N); with MOPS; with chloride +0.5 -0.4 -0.1 -0.1 +0.0
stress Betaine (C)(N); with MOPS; with chloride +0.5 +0.2 +0.1 -0.5 -0.1
stress Betaine (C)(N); with TAPS; with chloride +0.4 -0.5 +0.1 +0.0 +0.1
carbon source propionate (C) -0.6 +0.6 +0.1 +0.1 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.6 +0.0 +0.1 -0.4 +0.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.4 -0.3 +0.1 +0.2 +0.1
carbon source L-Valine (C) -0.2 +0.4 -0.1 +0.3 +0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.4 +0.2 +0.1 +0.2 -0.2
carbon source p-Coumaric (C) 5 mM +0.5 -0.3 +0.1 +0.2 +0.1
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.8 -0.3 -0.0 -0.0 +0.1
carbon source Shikimic Acid (C) +0.4 +0.5 -0.1 -0.1 +0.2
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.5 +0.2 +0.0 +0.3 -0.1
carbon source L-Valine (C) +0.0 +0.7 -0.0 -0.1 +0.3
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.7 +0.3 +0.1 -0.1 +0.1
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