Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS06990 and PFLU_RS06995 are separated by 59 nucleotidesPFLU_RS06995 and PFLU_RS07000 are separated by 0 nucleotidesPFLU_RS07000 and PFLU_RS07005 are separated by 69 nucleotidesPFLU_RS07005 and PFLU_RS30455 are separated by 7 nucleotides PFLU_RS06990: PFLU_RS06990 - hydroxymethylglutaryl-CoA lyase, at 1,564,214 to 1,565,155 _RS06990 PFLU_RS06995: PFLU_RS06995 - MFS transporter, at 1,565,215 to 1,566,546 _RS06995 PFLU_RS07000: PFLU_RS07000 - DMT family transporter, at 1,566,547 to 1,567,035 _RS07000 PFLU_RS07005: PFLU_RS07005 - LysR family transcriptional regulator, at 1,567,105 to 1,568,022 _RS07005 PFLU_RS30455: PFLU_RS30455 - type II toxin-antitoxin system RelE/ParE family toxin, at 1,568,030 to 1,568,152 _RS30455
Group Condition PFLU_RS06990 PFLU_RS06995 PFLU_RS07000 PFLU_RS07005 PFLU_RS30455
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.5 -0.1 -1.4 +0.1 -0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.4 +0.1 -0.5 -0.1 -0.3
stress malate (C) and Ammonium chloride (N); with TAPS -1.2 +0.2 -0.1 +0.1 -0.1
stress Betaine (C)(N); with MOPS; with chloride -0.2 -0.0 -1.2 +0.0 +0.2
stress Betaine (C)(N); with TAPS; with chloride -1.2 +0.0 -0.1 -0.2 +0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.2 -0.2 -1.2 +0.0 -0.1
stress malate (C) and Ammonium chloride (N); with MOPS -1.2 +0.2 -0.0 -0.1 +0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.8 -0.1 +0.5 -0.1 -0.3
stress malate (C) and Ammonium chloride (N); with MOPS -1.2 +0.3 +0.1 +0.1 -0.1
stress malate (C) and Ammonium chloride (N); with MOPS -1.4 +0.3 +0.4 +0.1 -0.1
stress malate (C) and Ammonium chloride (N); with MOPS -1.2 +0.3 +0.2 +0.0 +0.0
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.2 +0.3 -0.2 -0.2 -0.5
stress malate (C) and Ammonium chloride (N); with MOPS -0.8 +0.5 +0.1 +0.0 -0.1
stress malate (C) and Ammonium chloride (N); with MOPS -0.9 +0.4 +0.1 +0.0 -0.0
stress malate (C) and Ammonium chloride (N); with MOPS -0.8 +0.3 +0.2 +0.1 -0.1
stress malate (C) and Ammonium chloride (N); with MOPS -0.9 +0.3 +0.2 +0.0 +0.0
stress Betaine (C)(N); with MOPS; with chloride +0.4 +0.2 -0.5 -0.0 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.2 -0.2 -0.4 +0.2 +0.9
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.2 +0.1 +0.9 -0.1 -0.5
carbon source 4-Aminobutyric (C) -0.1 -0.3 +0.9 +0.1 +0.2
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.5 -0.2 +0.4 -0.1 +0.2
carbon source NAG (C) -0.3 +0.0 +0.5 +0.3 +0.5
carbon source L-Valine (C) +0.3 +0.2 -0.2 +0.4 +1.2
carbon source L-Valine 10 mM (C) -0.2 +0.2 -0.3 +0.9 +2.3
carbon source L-Valine 10 mM (C) +0.4 +0.0 -0.0 +0.9 +2.0
carbon source L-Valine (C) +0.7 -0.0 +0.8 +0.6 +1.4
carbon source L-Valine 10 mM (C) +0.1 +0.1 +0.5 +0.8 +2.8
carbon source Citraconic 20 mM (C) -1.9 +3.6 +1.9 +0.5 +0.2
carbon source Citraconic 20 mM (C) -2.2 +3.6 +2.2 +0.4 +0.3
carbon source Citraconic 20 mM (C) -1.6 +3.9 +2.0 +0.5 +0.1
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