Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS06930 and PFLU_RS06935 are separated by 128 nucleotidesPFLU_RS06935 and PFLU_RS06940 overlap by 4 nucleotidesPFLU_RS06940 and PFLU_RS06945 are separated by 148 nucleotidesPFLU_RS06945 and PFLU_RS06950 are separated by 27 nucleotides PFLU_RS06930: PFLU_RS06930 - TonB-dependent receptor, at 1,550,979 to 1,553,543 _RS06930 PFLU_RS06935: PFLU_RS06935 - DUF4880 domain-containing protein, at 1,553,672 to 1,554,640 _RS06935 PFLU_RS06940: PFLU_RS06940 - sigma-70 family RNA polymerase sigma factor, at 1,554,637 to 1,555,176 _RS06940 PFLU_RS06945: PFLU_RS06945 - dihydrodipicolinate synthase family protein, at 1,555,325 to 1,556,197 _RS06945 PFLU_RS06950: PFLU_RS06950 - aldolase, at 1,556,225 to 1,557,007 _RS06950
Group Condition PFLU_RS06930 PFLU_RS06935 PFLU_RS06940 PFLU_RS06945 PFLU_RS06950
carbon source Xanthosine (C) +0.0 +0.1 -1.7 -0.2 -0.4
stress Betaine (C)(N); with TAPS; with chloride -0.2 -0.2 -1.4 -0.1 +0.1
nitrogen source nitrate (N) -0.1 -0.2 -0.4 -0.4 -0.4
no stress control Sucrose (C) and Glycine betaine (N); with TAPS -0.0 -1.3 -0.2 +0.0 -0.0
no stress control Sucrose (C) and Glycine betaine (N); with TAPS -0.0 -1.4 +0.1 -0.0 -0.1
carbon source L-Isoleucine (C) -0.1 -0.1 -0.5 -0.6 -0.2
pH Growth at pH9 and (C) Trisodium citrate +0.2 +0.3 -0.7 -0.8 -0.4
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.1 +0.2 -1.3 +0.0 -0.2
carbon source p-Coumaric 2 mM (C) -0.2 +0.1 -0.9 -0.3 -0.1
carbon source D-Xylose (C) -0.1 +0.2 -1.0 -0.2 -0.1
stress Betaine (C)(N); with MOPS; with chloride -0.1 +0.0 -1.0 +0.2 -0.4
stress Betaine (C)(N); with TAPS; with chloride -0.1 +0.1 -0.6 -0.1 -0.5
pH Growth at pH6 and (C) D-Glucose +0.1 +0.1 -0.7 -0.2 -0.4
stress Betaine (C)(N); with MOPS; with chloride -0.2 -0.6 +0.2 -0.4 -0.1
stress Glucose (C) and Betaine (N); with TAPS; with chloride +0.0 +0.1 -0.9 +0.0 -0.3
pH Growth at pH9 and (C) Trisodium citrate -0.2 -0.3 -0.3 +0.4 -0.5
carbon source m-Inositol (C) +0.1 -0.1 -0.9 +0.2 -0.1
carbon source D-Glucuronic (C) -0.1 -0.1 -0.8 +0.3 -0.1
stress Betaine (C)(N); with MOPS; with chloride -0.1 +0.1 -0.7 -0.2 +0.2
stress Betaine (C)(N); with TAPS; with chloride -0.1 +0.2 +0.2 -0.3 -0.7
carbon source acetate (C) +0.1 +0.3 -0.6 -0.3 -0.2
carbon source propionate 20 mM (C) -0.1 +0.1 +0.4 -0.2 -0.7
temperature Growth at 25C; with MOPS -0.1 +0.2 -1.1 +0.3 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.1 +0.3 -0.6 +0.3 -0.1
no stress control Glycine betaine (C)(N); with MOPS +0.0 +0.2 -0.5 +0.3 -0.3
no stress control L-Glutamine (C)(N); with TAPS -0.1 +0.7 -0.7 -0.2 -0.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.0 +0.6 -0.8 +0.3 -0.1
carbon source p-Coumaric (C) 5 mM +0.1 -0.4 +0.5 +0.3 +0.1
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS -0.0 +1.4 +0.0 -0.2 +0.0
no stress control Sucrose (C) and Ammonium chloride (N); with MOPS -0.0 +1.3 +0.1 +0.0 -0.0
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