Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS06505 and PFLU_RS06510 overlap by 4 nucleotidesPFLU_RS06510 and PFLU_RS06515 are separated by 19 nucleotidesPFLU_RS06515 and PFLU_RS06520 are separated by 4 nucleotidesPFLU_RS06520 and PFLU_RS06525 are separated by 190 nucleotides PFLU_RS06505: PFLU_RS06505 - zinc chelation protein SecC, at 1,456,472 to 1,456,672 _RS06505 PFLU_RS06510: PFLU_RS06510 - hypothetical protein, at 1,456,669 to 1,457,151 _RS06510 PFLU_RS06515: PFLU_RS06515 - YchJ family protein, at 1,457,171 to 1,457,641 _RS06515 PFLU_RS06520: PFLU_RS06520 - hypothetical protein, at 1,457,646 to 1,458,143 _RS06520 PFLU_RS06525: PFLU_RS06525 - OmpA family protein, at 1,458,334 to 1,459,029 _RS06525
Group Condition PFLU_RS06505 PFLU_RS06510 PFLU_RS06515 PFLU_RS06520 PFLU_RS06525
carbon source Inosine (C) N.D. -0.5 -0.4 -0.2 -0.3
nitrogen source NAG (N); with MOPS N.D. -0.5 +0.1 -0.7 -0.2
carbon source p-Coumaric (C) 5 mM N.D. -0.1 -0.0 -0.9 -0.3
pH Growth at pH9 and (C) Trisodium citrate N.D. -0.6 -0.1 -0.5 -0.1
no stress control Glycine betaine (C)(N); with TAPS N.D. -0.1 +0.0 -0.6 -0.5
carbon source octanoate 10 mM (C) N.D. +0.0 +0.1 -0.9 -0.3
carbon source 4-Acetoxy-3-methoxycinnamic 2 mM (C) N.D. -0.3 +0.2 -0.5 -0.4
carbon source L-Valine 10 mM (C) N.D. -0.7 -0.5 -0.1 +0.3
temperature Growth at 30C N.D. -0.3 +0.2 -0.2 -0.5
carbon source Xanthosine (C) N.D. -0.4 -0.4 -0.1 +0.3
carbon and nitrogen source NAG carbon and (N) N.D. +0.1 +0.3 -0.3 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. +0.4 -0.0 -0.7 -0.1
carbon source 4-Aminobutyric (C) N.D. -0.2 -0.1 -0.6 +0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride N.D. -0.2 -0.5 -0.2 +0.4
carbon source L-Isoleucine (C) N.D. -0.3 +0.1 -0.5 +0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride N.D. -0.1 -0.4 +0.4 -0.3
carbon source propionate 20 mM (C) N.D. -0.4 -0.0 -0.4 +0.4
carbon source p-Coumaric (C) 5 mM N.D. +0.6 +0.0 -1.2 +0.1
carbon source D-Glucose (C); with MOPS N.D. -0.6 +0.4 -0.2 -0.0
no stress control L-Glutamine (C)(N); with MOPS N.D. -0.5 -0.3 +0.2 +0.3
no stress control Ferulic (C) and Ammonium chloride (N); with MOPS N.D. +0.2 +0.1 -0.6 +0.3
carbon source p-Coumaric (C) 5 mM N.D. +0.4 +0.1 -0.6 +0.1
carbon source NAG (C) N.D. +0.3 +0.3 -0.6 +0.1
carbon source 4-Hydroxybenzoic Acid 2 mM (C) N.D. -0.4 -0.1 +0.4 +0.4
stress Betaine (C)(N); with MOPS; with chloride N.D. +0.5 -0.5 +0.3 +0.0
carbon source p-Coumaric (C) 5 mM N.D. +0.6 +0.2 -0.4 +0.0
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride N.D. +0.3 +0.2 -0.3 +0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride N.D. +0.4 +0.3 -0.5 +0.5
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride N.D. +0.4 +0.1 -0.2 +0.6
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride N.D. +0.3 +0.2 +0.5 +0.3
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