Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS06165 and PFLU_RS06170 are separated by 96 nucleotidesPFLU_RS06170 and PFLU_RS06175 are separated by 130 nucleotidesPFLU_RS06175 and PFLU_RS06180 are separated by 94 nucleotidesPFLU_RS06180 and PFLU_RS06185 are separated by 6 nucleotides PFLU_RS06165: PFLU_RS06165 - hypothetical protein, at 1,378,252 to 1,378,872 _RS06165 PFLU_RS06170: PFLU_RS06170 - ribosomal RNA small subunit methyltransferase J, at 1,378,969 to 1,379,751 _RS06170 PFLU_RS06175: PFLU_RS06175 - TetR/AcrR family transcriptional regulator, at 1,379,882 to 1,380,517 _RS06175 PFLU_RS06180: PFLU_RS06180 - efflux RND transporter periplasmic adaptor subunit, at 1,380,612 to 1,381,712 _RS06180 PFLU_RS06185: PFLU_RS06185 - efflux RND transporter permease subunit, at 1,381,719 to 1,384,784 _RS06185
Group Condition PFLU_RS06165 PFLU_RS06170 PFLU_RS06175 PFLU_RS06180 PFLU_RS06185
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -3.5 -1.2 -0.1 -0.1 -0.1
carbon source Shikimic Acid (C) -1.9 -1.5 +0.1 +0.0 -0.2
carbon and nitrogen source NAG carbon and (N) -0.5 -1.6 -1.2 +0.1 +0.0
stress Betaine (C)(N); with TAPS; with chloride -1.1 -1.3 -1.4 +0.4 +0.3
carbon source acetate (C) -2.2 -0.5 -0.1 -0.1 -0.1
stress Glucose (C) and L-Glutamine (N); with TAPS; with chloride -1.8 -0.8 -0.2 -0.2 +0.0
stress Betaine (C)(N); with MOPS; with chloride -2.6 -0.4 +0.3 -0.1 -0.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.3 -2.7 -0.4 +0.0 -0.1
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -1.6 -1.3 +0.0 +0.3 -0.0
pH Growth at pH8 and (C) Trisodium citrate -0.8 -1.5 +0.1 -0.4 -0.1
stress L-Glutamine (C)(N); with MOPS; with chloride -0.5 -1.8 -0.1 +0.0 -0.1
carbon source 2-Keto-D-gluconic hemicalcium salt (C) -2.0 -0.3 -0.2 +0.1 -0.1
stress Betaine (C)(N); with TAPS; with chloride -1.5 -0.4 -0.5 -0.1 +0.1
no stress control Glycine betaine (C)(N); with MOPS -0.6 -1.6 +0.3 -0.3 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.6 -1.3 +0.1 +0.5 +0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.5 -1.9 -0.0 +0.2 +0.1
carbon source L-Arabinose (C) -1.1 -0.7 +0.5 -0.1 -0.3
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.2 -1.1 -0.7 +0.2 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.3 -1.9 -0.2 +0.3 +0.1
carbon source L-Valine (C) +0.0 -1.3 +0.8 -0.5 -0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.7 -1.1 -0.3 -0.2 -0.1
stress Betaine (C)(N); with MOPS; with chloride +0.6 -1.3 -0.5 +0.2 -0.0
carbon source Trisodium citrate (C); with MOPS -1.7 +0.6 -0.0 +0.2 +0.0
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +1.2 -1.3 -0.2 -0.5 -0.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.9 -1.6 +0.4 +0.1 +0.2
stress Betaine (C)(N); with MOPS; with chloride +1.3 -0.7 -0.5 +0.0 -0.0
carbon source L-Isoleucine (C) +0.9 -1.0 +0.3 +0.1 -0.1
carbon source Phloretic Acid 2 mM (C) +0.8 +0.7 -0.2 -0.8 +0.0
carbon source L-Carnitine (C) +1.8 -0.3 +0.4 +0.0 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +1.1 +0.8 -0.2 +0.3 -0.1
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