Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS05940 and PFLU_RS05945 are separated by 102 nucleotidesPFLU_RS05945 and PFLU_RS05950 are separated by 97 nucleotidesPFLU_RS05950 and PFLU_RS30435 are separated by 181 nucleotidesPFLU_RS30435 and PFLU_RS05955 are separated by 375 nucleotides PFLU_RS05940: PFLU_RS05940 - RNA-binding protein S4, at 1,327,191 to 1,327,901 _RS05940 PFLU_RS05945: PFLU_RS05945 - GNAT family N-acetyltransferase, at 1,328,004 to 1,328,471 _RS05945 PFLU_RS05950: PFLU_RS05950 - 30S ribosomal protein S12 methylthiotransferase RimO, at 1,328,569 to 1,329,909 _RS05950 PFLU_RS30435: PFLU_RS30435 - DNA-binding protein, at 1,330,091 to 1,330,225 _RS30435 PFLU_RS05955: PFLU_RS05955 - potassium transporter Kup, at 1,330,601 to 1,332,502 _RS05955
Group Condition PFLU_RS05940 PFLU_RS05945 PFLU_RS05950 PFLU_RS30435 PFLU_RS05955
carbon source 4-Aminobutyric (C) -0.6 -0.1 -1.0 -0.7 -0.3
carbon source propionate 20 mM (C) -0.3 -0.3 -1.0 +0.0 -0.5
carbon source propionate 20 mM (C) +0.2 -0.3 -1.6 +0.2 -0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.1 -0.1 -0.7 -0.4 -0.3
carbon source p-Coumaric 2 mM (C) -0.3 -0.2 -0.8 -0.1 -0.2
pH Growth at pH9 and (C) Trisodium citrate -1.0 -0.1 -0.2 +0.1 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.2 +0.1 -0.7 +0.1 -0.7
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.5 -0.1 +0.3 -0.5 -0.1
stress Betaine (C)(N); with TAPS; with chloride -0.4 +0.3 -0.8 +0.0 +0.0
carbon source propionate 20 mM (C) +0.2 -0.0 -1.2 +0.4 -0.2
temperature Growth at 25C +0.4 -0.2 -0.1 -0.5 -0.5
carbon source acetate 30 mM (C) +0.2 -0.3 -0.0 -1.0 +0.4
carbon source Inosine (C) -0.3 -0.0 -0.0 -0.7 +0.4
carbon source Quinic Acid (C) -0.4 -0.1 +0.4 -0.2 -0.5
carbon and nitrogen source NAG carbon and (N) -1.0 +0.2 -0.2 +0.1 +0.2
carbon source NAG (C) -0.6 -0.5 +0.1 +0.1 +0.3
carbon source acetate 30 mM (C) -0.5 +0.1 -0.4 -0.3 +0.5
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.3 +0.3 +0.2 -0.4 -0.3
carbon source Inosine (C) +0.2 +0.2 -0.2 -0.9 +0.2
no stress control Glycine betaine (C)(N); with MOPS -0.1 +0.1 -1.1 +0.5 +0.2
carbon source L-Valine (C) -0.3 +0.5 +0.2 -0.7 -0.0
carbon source caffeic 2 mM (C) -0.7 -0.3 +0.6 +0.5 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.5 -0.5 -0.1 +0.5 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.4 +0.0 -0.5 +0.6 -0.2
stress Betaine (C)(N); with TAPS; with chloride -0.5 +0.3 -0.0 +0.6 -0.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.8 -0.2 -0.3 -0.1 +0.2
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.2 +0.5 -0.3 +0.2 +0.5
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.4 +0.7 +0.0 +0.7 +0.2
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.1 +0.3 -0.0 +0.6 +0.5
carbon source D-Glucosamine Hydrochloride 10 mM (C) +0.2 +0.2 +1.1 +0.3 -0.0
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