Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS05865 and PFLU_RS05870 are separated by 21 nucleotidesPFLU_RS05870 and PFLU_RS05875 overlap by 13 nucleotidesPFLU_RS05875 and PFLU_RS05880 are separated by 81 nucleotidesPFLU_RS05880 and PFLU_RS05885 are separated by 84 nucleotides PFLU_RS05865: PFLU_RS05865 - hypothetical protein, at 1,315,371 to 1,316,381 _RS05865 PFLU_RS05870: PFLU_RS05870 - glycoside hydrolase family 19 protein, at 1,316,403 to 1,316,960 _RS05870 PFLU_RS05875: PFLU_RS05875 - lysozyme, at 1,316,948 to 1,317,448 _RS05875 PFLU_RS05880: PFLU_RS05880 - CinA family protein, at 1,317,530 to 1,318,030 _RS05880 PFLU_RS05885: PFLU_RS05885 - recombinase RecA, at 1,318,115 to 1,319,173 _RS05885
Group Condition PFLU_RS05865 PFLU_RS05870 PFLU_RS05875 PFLU_RS05880 PFLU_RS05885
carbon source L-Valine 10 mM (C) +0.4 -0.3 -2.4 -3.0 -0.4
temperature shift Temperature shift 10_to_25; with MOPS -0.5 -0.4 -2.7 -0.2 -1.4
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.2 -0.1 -2.1 -1.6 -0.7
carbon source L-Valine 10 mM (C) -0.3 -0.4 -1.5 -2.8 +0.5
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.2 -0.2 -0.4 -3.1 -0.7
carbon source L-Valine (C) -0.1 +0.2 -3.6 -1.2 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.4 -0.4 -1.8 -0.8 -1.7
temperature Growth at 25C; with MOPS -0.4 +0.1 -1.2 -0.8 -2.0
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.0 +0.0 -1.9 -2.4 +0.2
carbon and nitrogen source NAG carbon and (N) -0.4 +0.0 -1.8 -0.8 -1.2
pH Growth at pH9 and (C) Trisodium citrate +0.1 -0.3 -1.8 -1.2 -0.9
stress Growth with Chloride 200 mM; with MOPS -0.4 -0.1 -0.9 -0.8 -1.8
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.2 +0.0 -1.9 -2.9 +0.7
pH Growth at pH8 and (C) D-Glucose -0.5 +0.1 -0.8 -1.1 -1.5
carbon source NAG (C) +0.0 +0.2 -2.1 -0.7 -1.2
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.1 +0.2 -0.1 -3.1 -0.9
no stress control Glucose (C) and L-Glutamine (N); with TAPS -0.0 -0.2 -3.8 +0.4 -0.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.1 +0.2 +0.2 -2.3 -1.4
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.2 +0.1 -0.8 -3.0 +0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.5 -0.2 -3.3 -0.7 +0.6
stress Betaine (C)(N); with MOPS; with chloride +0.3 -0.1 -2.6 -0.8 +0.6
pH Growth at pH8 and (C) Trisodium citrate -0.3 +0.6 +0.4 -1.3 -1.7
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.3 +0.3 +0.8 -3.4 +0.3
carbon source L-Valine 10 mM (C) +0.1 -0.2 +1.1 -2.7 +0.3
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.2 -0.3 +1.3 -2.4 +0.7
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.3 +0.2 +0.9 -2.1 +1.0
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.3 -0.3 +0.0 -1.3 +2.2
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.0 -0.1 -0.7 -0.7 +2.5
carbon source acetate 30 mM (C) -0.7 +0.4 -0.5 +2.1 +0.3
stress Betaine (C)(N); with TAPS; with chloride +0.5 +0.2 +1.5 -1.0 +0.8
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