Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS05770 and PFLU_RS05775 overlap by 8 nucleotidesPFLU_RS05775 and PFLU_RS05780 are separated by 266 nucleotidesPFLU_RS05780 and PFLU_RS31425 are separated by 5 nucleotidesPFLU_RS31425 and PFLU_RS05785 are separated by 337 nucleotides PFLU_RS05770: PFLU_RS05770 - hypothetical protein, at 1,302,644 to 1,303,015 _RS05770 PFLU_RS05775: PFLU_RS05775 - DUF4065 domain-containing protein, at 1,303,008 to 1,303,496 _RS05775 PFLU_RS05780: PFLU_RS05780 - helix-turn-helix transcriptional regulator, at 1,303,763 to 1,304,497 _RS05780 PFLU_RS31425: PFLU_RS31425 - hypothetical protein, at 1,304,503 to 1,304,751 _RS31425 PFLU_RS05785: PFLU_RS05785 - hypothetical protein, at 1,305,089 to 1,305,433 _RS05785
Group Condition PFLU_RS05770 PFLU_RS05775 PFLU_RS05780 PFLU_RS31425 PFLU_RS05785
pH Growth at pH7 and (C) D-Glucose +0.1 -0.3 -1.3 -3.3 -0.1
stress Sucrose (C) and L-Glutamine (N); with MOPS -0.0 +0.0 -1.7 -2.4 -0.5
stress L-Glutamine (C)(N); with MOPS; with chloride +0.2 +0.3 -0.5 -4.0 -0.6
temperature shift Temperature shift 30_to_4; with MOPS +0.0 -0.1 -3.7 -0.6 +0.0
temperature shift Temperature shift 30_to_4; with MOPS -0.3 -0.1 -3.6 -0.3 +0.0
carbon source Xanthosine (C) +0.1 -0.5 +0.1 -3.2 -0.6
temperature shift Temperature shift 30_to_4 +0.1 -0.1 -3.7 -0.8 +0.3
carbon source L-Lysine (C) -0.4 -0.4 -0.1 -3.0 -0.2
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.4 +0.3 +0.0 -3.8 -0.3
pH Growth at pH7 and (C) D-Glucose -0.2 +0.6 -0.7 -3.3 -0.5
stress Betaine (C)(N); with MOPS; with chloride -0.1 +0.2 +0.0 -3.8 -0.3
carbon source 4-Acetoxy-3-methoxycinnamic 2 mM (C) -0.2 +0.2 +0.1 -3.6 -0.3
nitrogen source Ammonium chloride (N); with MOPS +0.3 +0.3 -1.2 -3.3 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.0 +0.2 -1.2 -2.3 -0.5
temperature shift Temperature shift 30_to_4; with MOPS -0.0 -0.0 -3.8 -0.0 +0.2
stress Glucose (C) and L-Glutamine (N); with MOPS; with chloride +0.3 +0.0 -0.1 -3.9 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.1 +0.2 -1.0 -2.4 -0.6
stress Betaine (C)(N); with MOPS; with chloride +0.2 +0.3 -0.1 -4.0 -0.0
temperature shift Temperature shift 30_to_4 -0.0 -0.0 -3.7 +0.5 -0.2
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.1 -0.0 -0.4 -3.4 +0.3
pH Growth at pH9 and (C) D-Glucose -0.2 +0.3 -2.6 -0.9 +0.0
carbon source L-Valine (C) -0.4 -1.0 +0.7 -2.9 +0.4
carbon source NAG (C) +0.1 +0.6 -0.6 -3.3 +0.2
carbon source propionate (C) -0.2 -0.1 +0.4 -3.1 +0.2
carbon source p-Coumaric 2 mM (C) +0.2 +0.0 +0.7 -3.6 +0.8
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.2 +0.8 -0.8 -2.6 +0.5
carbon source Ferulic Acid 2 mM (C) -0.4 -0.3 +0.7 -2.2 +0.6
carbon source L-Valine (C) -0.0 +0.2 +1.3 -3.0 +0.4
pH Growth at pH8 and (C) Trisodium citrate +0.1 +0.5 -1.0 +2.5 +0.6
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.2 -0.2 +1.4 +1.5 +1.3
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