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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25-INTG
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS05705 and PFLU_RS05710 are separated by 337 nucleotides
PFLU_RS05710 and PFLU_RS05715 overlap by 4 nucleotides
PFLU_RS05715 and PFLU_RS05720 are separated by 156 nucleotides
PFLU_RS05720 and PFLU_RS05725 are separated by 141 nucleotides
PFLU_RS05705: PFLU_RS05705 - peroxiredoxin, at 1,286,813 to 1,287,415
_RS05705
PFLU_RS05710: PFLU_RS05710 - ribonuclease T, at 1,287,753 to 1,288,424
_RS05710
PFLU_RS05715: PFLU_RS05715 - dihydroorotase, at 1,288,421 to 1,289,467
_RS05715
PFLU_RS05720: PFLU_RS05720 - OmpA family protein, at 1,289,624 to 1,290,532
_RS05720
PFLU_RS05725: PFLU_RS05725 - argininosuccinate synthase, at 1,290,674 to 1,291,891
_RS05725
Group
Condition
PFLU
_RS05705
PFLU
_RS05710
PFLU
_RS05715
PFLU
_RS05720
PFLU
_RS05725
carbon source
L-Malic (C)
-0.5
N.D.
N.D.
-2.2
N.D.
carbon source
D,L-Malic Acid (C)
+0.2
N.D.
N.D.
-2.9
N.D.
carbon source
L-Malic (C)
+0.0
N.D.
N.D.
-2.4
N.D.
carbon source
Xanthosine (C)
-0.5
N.D.
N.D.
-1.7
N.D.
carbon source
Xanthosine (C)
-0.4
N.D.
N.D.
-1.8
N.D.
carbon source
Phloretic Acid 2 mM (C)
-0.5
N.D.
N.D.
-1.5
N.D.
carbon source
Xanthosine (C)
-0.0
N.D.
N.D.
-1.9
N.D.
carbon source
L-Glutamic (C)
-0.1
N.D.
N.D.
-1.7
N.D.
carbon source
Quinic Acid (C)
-0.0
N.D.
N.D.
-1.8
N.D.
carbon source
D,L-Malic Acid (C)
-0.2
N.D.
N.D.
-1.5
N.D.
carbon source
Phloretic Acid 2 mM (C)
+0.1
N.D.
N.D.
-1.5
N.D.
carbon source
L-Glutamic (C)
+0.3
N.D.
N.D.
-1.6
N.D.
carbon source
trans-aconitic 5 mM (C)
+0.3
N.D.
N.D.
-1.5
N.D.
carbon source
NAG (C); with MOPS
-1.0
N.D.
N.D.
+1.0
N.D.
carbon source
NAG (C)
-1.1
N.D.
N.D.
+1.1
N.D.
carbon source
NAG (C); with MOPS
-0.8
N.D.
N.D.
+1.0
N.D.
carbon and nitrogen source
NAG carbon and (N); with MOPS
-0.7
N.D.
N.D.
+1.0
N.D.
carbon and nitrogen source
NAG carbon and (N)
-0.8
N.D.
N.D.
+1.1
N.D.
carbon source
L-Valine (C)
-0.5
N.D.
N.D.
+1.2
N.D.
carbon source
p-Coumaric (C) 5 mM
-0.4
N.D.
N.D.
+1.3
N.D.
carbon source
L-Valine (C)
-0.5
N.D.
N.D.
+1.4
N.D.
carbon source
p-Coumaric (C) 5 mM
-0.6
N.D.
N.D.
+1.7
N.D.
stress
p-Coumaric (C) and Ammonium chloride (N); with TAPS
-0.3
N.D.
N.D.
+1.4
N.D.
stress
p-Coumaric (C) and Ammonium chloride (N); with TAPS
-0.1
N.D.
N.D.
+1.5
N.D.
carbon source
p-Coumaric (C) 5 mM
-0.1
N.D.
N.D.
+1.6
N.D.
carbon source
4-Acetoxy-3-methoxycinnamic (C)
+0.0
N.D.
N.D.
+1.7
N.D.
stress
p-Coumaric (C) and Ammonium chloride (N); with TAPS
-0.3
N.D.
N.D.
+2.2
N.D.
stress
p-Coumaric (C) and Ammonium chloride (N); with TAPS
-0.3
N.D.
N.D.
+2.2
N.D.
stress
p-Coumaric (C) and Ammonium chloride (N); with TAPS
-0.3
N.D.
N.D.
+2.4
N.D.
stress
p-Coumaric (C) and Ammonium chloride (N); with TAPS
+0.1
N.D.
N.D.
+2.1
N.D.
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