Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS05695 and PFLU_RS05700 are separated by 201 nucleotidesPFLU_RS05700 and PFLU_RS05705 are separated by 243 nucleotidesPFLU_RS05705 and PFLU_RS05710 are separated by 337 nucleotidesPFLU_RS05710 and PFLU_RS05715 overlap by 4 nucleotides PFLU_RS05695: PFLU_RS05695 - bacterioferritin, at 1,285,679 to 1,286,149 _RS05695 PFLU_RS05700: PFLU_RS05700 - bacterioferritin-associated ferredoxin, at 1,286,351 to 1,286,569 _RS05700 PFLU_RS05705: PFLU_RS05705 - peroxiredoxin, at 1,286,813 to 1,287,415 _RS05705 PFLU_RS05710: PFLU_RS05710 - ribonuclease T, at 1,287,753 to 1,288,424 _RS05710 PFLU_RS05715: PFLU_RS05715 - dihydroorotase, at 1,288,421 to 1,289,467 _RS05715
Group Condition PFLU_RS05695 PFLU_RS05700 PFLU_RS05705 PFLU_RS05710 PFLU_RS05715
carbon source 4-Hydroxyphenylpropionic (C) 5 mM -1.7 -0.9 -0.3 N.D. N.D.
carbon source 4-Hydroxyphenylpropionic (C) 5 mM -1.5 -1.3 -0.1 N.D. N.D.
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM -1.5 -0.8 -0.3 N.D. N.D.
carbon source 4-Hydroxyphenylpropionic (C) 5 mM -1.1 -0.8 -0.3 N.D. N.D.
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM -1.4 -0.4 -0.2 N.D. N.D.
carbon source sn-glycero-3-phosphocholine (C) -1.4 -0.3 -0.1 N.D. N.D.
pH Growth at pH9 and (C) D-Glucose -1.2 -0.2 -0.3 N.D. N.D.
carbon source 4-Hydroxyphenylpropionic (C) 5 mM -0.9 -0.8 +0.1 N.D. N.D.
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM -1.2 -0.2 -0.2 N.D. N.D.
carbon source sn-glycero-3-phosphocholine 10 mM (C) -1.3 -0.2 +0.1 N.D. N.D.
carbon source L-Lysine (C) -0.4 -0.2 -0.8 N.D. N.D.
carbon source sn-glycero-3-phosphocholine (C) -1.3 -0.1 +0.1 N.D. N.D.
carbon source sn-glycero-3-phosphocholine 10 mM (C) -1.5 -0.1 +0.3 N.D. N.D.
carbon source NAG (C); with MOPS +0.4 -0.4 -1.0 N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.4 -0.7 +0.4 N.D. N.D.
carbon source L-Carnitine (C) -0.1 +0.3 -1.0 N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.7 -0.4 +0.4 N.D. N.D.
carbon source acetate 30 mM (C) +0.9 -0.8 -0.7 N.D. N.D.
carbon source NAG (C) +0.7 -0.2 -1.1 N.D. N.D.
carbon source acetate 30 mM (C) +0.5 -0.6 -0.2 N.D. N.D.
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.5 +0.6 -0.4 N.D. N.D.
stress Betaine (C)(N); with MOPS; with chloride +0.3 -1.0 +0.6 N.D. N.D.
carbon source NAG 10 mM (C) +0.6 -0.2 -0.6 N.D. N.D.
stress Betaine (C)(N); with MOPS; with chloride -0.3 -0.6 +0.8 N.D. N.D.
pH Growth at pH8 and (C) Trisodium citrate -0.0 -0.9 +1.0 N.D. N.D.
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS +0.7 -0.7 +0.1 N.D. N.D.
no stress control L-Glutamine (C)(N); with MOPS +0.5 -0.5 +0.4 N.D. N.D.
carbon source Choline chloride (C) +0.7 +0.4 -0.3 N.D. N.D.
carbon source NAG (C) +0.9 +0.3 -0.2 N.D. N.D.
carbon source L-Valine 10 mM (C) +1.0 +0.6 +0.1 N.D. N.D.
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