Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 1213 experiments or choose conditions or try the comparative fitness browser

500 ntPFLU_RS05405 and PFLU_RS05410 overlap by 4 nucleotidesPFLU_RS05410 and PFLU_RS05415 are separated by 472 nucleotidesPFLU_RS05415 and PFLU_RS05420 are separated by 51 nucleotidesPFLU_RS05420 and PFLU_RS05425 are separated by 19 nucleotides PFLU_RS05405: PFLU_RS05405 - siderophore-interacting protein, at 1,206,884 to 1,207,651 _RS05405 PFLU_RS05410: PFLU_RS05410 - PadR family transcriptional regulator, at 1,207,648 to 1,208,169 _RS05410 PFLU_RS05415: PFLU_RS05415 - type 1 fimbrial protein, at 1,208,642 to 1,209,151 _RS05415 PFLU_RS05420: PFLU_RS05420 - type 1 fimbrial protein, at 1,209,203 to 1,209,757 _RS05420 PFLU_RS05425: PFLU_RS05425 - outer membrane usher protein, at 1,209,777 to 1,212,371 _RS05425
Group Condition PFLU_RS05405 PFLU_RS05410 PFLU_RS05415 PFLU_RS05420 PFLU_RS05425
carbon source p-Coumaric (C) 5 mM -0.1 -0.9 -0.8 -1.7 -0.2
carbon source p-Coumaric (C) 5 mM -0.5 +0.2 -0.7 -2.2 -0.1
carbon source Sucrose 5 mM (C) -0.5 -1.6 -0.3 -0.2 -0.3
carbon source p-Coumaric (C) 5 mM -0.0 +0.0 -0.6 -2.2 -0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.2 -0.2 -0.7 -1.7 -0.1
carbon source p-Coumaric (C) 5 mM +0.1 -0.5 -0.8 -1.1 +0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.3 -0.1 -0.7 -0.8 -0.3
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.3 -0.3 -0.5 -0.5 -0.3
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.1 -0.7 -0.4 -0.8 +0.1
carbon source Xanthosine (C) -0.6 -0.8 +0.0 -0.2 -0.3
carbon source L-Arabinose (C) -0.5 -0.7 -0.2 -0.3 -0.0
no stress control Ferulic (C) and Ammonium chloride (N); with MOPS -0.1 -0.8 -0.3 -0.4 -0.1
carbon source D-(+)-Galactosamine (C) -0.2 -0.9 -0.2 -0.4 -0.0
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.0 +0.0 -0.4 -1.1 -0.2
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.2 -0.0 -0.9 -0.6 -0.2
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.3 -0.4 -0.3 -0.6 +0.1
carbon source Quinic Acid (C) -0.2 -0.8 +0.2 -0.6 -0.0
carbon source Ferulic Acid 2 mM (C) -0.2 +0.1 -0.2 -1.1 -0.1
nitrogen source nitrate (N); with MOPS +0.2 -0.8 +0.0 -0.4 -0.4
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.3 +0.3 -0.4 -0.8 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.6 -0.7 +0.2 +0.0 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.1 +0.8 -0.4 -1.2 -0.3
pH Growth at pH9 and (C) Trisodium citrate -0.9 +0.7 -0.1 -0.5 -0.2
carbon source acetate 30 mM (C) -0.5 +0.6 -0.2 -0.3 -0.3
stress Betaine (C)(N); with TAPS; with chloride -0.6 -0.2 +0.2 -0.4 +0.2
carbon source NAG (C) +0.5 -1.0 +0.2 -0.3 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.1 -0.9 +0.4 +0.1 +0.1
carbon source L-Valine (C) +0.1 -0.9 -0.1 +0.8 -0.1
no stress control Glycine betaine (C)(N); with TAPS -0.7 +0.5 +0.1 -0.1 +0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.0 +0.8 -0.2 +0.3 +0.2
remove
PFLU_RS05405
plot		 remove
PFLU_RS05410
plot		 remove
PFLU_RS05415		 remove
PFLU_RS05420
plot		 remove
PFLU_RS05425
plot