Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS05395 and PFLU_RS05400 are separated by 4 nucleotidesPFLU_RS05400 and PFLU_RS05405 are separated by 1 nucleotidesPFLU_RS05405 and PFLU_RS05410 overlap by 4 nucleotidesPFLU_RS05410 and PFLU_RS05415 are separated by 472 nucleotides PFLU_RS05395: PFLU_RS05395 - DUF2132 domain-containing protein, at 1,206,021 to 1,206,254 _RS05395 PFLU_RS05400: PFLU_RS05400 - hypothetical protein, at 1,206,259 to 1,206,882 _RS05400 PFLU_RS05405: PFLU_RS05405 - siderophore-interacting protein, at 1,206,884 to 1,207,651 _RS05405 PFLU_RS05410: PFLU_RS05410 - PadR family transcriptional regulator, at 1,207,648 to 1,208,169 _RS05410 PFLU_RS05415: PFLU_RS05415 - type 1 fimbrial protein, at 1,208,642 to 1,209,151 _RS05415
Group Condition PFLU_RS05395 PFLU_RS05400 PFLU_RS05405 PFLU_RS05410 PFLU_RS05415
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -1.5 -0.7 -0.0 -0.1 -0.2
carbon source Sucrose 5 mM (C) -0.1 +0.1 -0.5 -1.6 -0.3
carbon source p-Coumaric (C) 5 mM -0.4 -0.0 -0.1 -0.9 -0.8
stress Betaine (C)(N); with TAPS; with chloride -1.0 -0.1 -0.4 -0.6 -0.3
carbon source L-Arabinose (C); with MOPS -1.1 -0.3 -0.1 -0.4 -0.0
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.6 +0.1 -0.3 -0.3 -0.5
carbon source p-Coumaric (C) 5 mM +0.0 -0.4 +0.1 -0.5 -0.8
carbon source p-Coumaric (C) 5 mM -0.6 -0.1 -0.5 +0.2 -0.7
carbon source L-Valine (C) -0.3 -0.7 -0.8 +0.2 -0.1
carbon source Xanthosine (C) -0.8 -0.0 +0.1 -0.8 +0.0
carbon source L-Arabinose (C) +0.3 -0.2 -0.5 -0.7 -0.2
no stress control Glucose (C) and Ammonium chloride (N); with TAPS +0.2 -0.4 +0.0 -1.1 +0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -1.0 +0.0 +0.5 -0.6 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.5 +0.2 +0.3 -0.8 -0.0
stress Betaine (C)(N); with TAPS; with chloride -1.1 +0.3 +0.2 -0.4 +0.1
carbon source 4-hydroxyphenylacetic 2 mM (C) -0.5 +0.2 +0.4 -0.9 -0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.5 -0.3 -0.2 -0.2 -0.7
no stress control Glycine betaine (C)(N); with MOPS -0.7 -0.4 -0.1 +0.5 +0.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.4 +0.0 -0.6 -0.7 +0.2
stress Betaine (C)(N); with TAPS; with chloride -0.7 -0.7 +0.4 +0.4 +0.1
carbon source NAG (C) +0.1 -0.3 +0.5 -1.0 +0.2
carbon source D-Glucosamine Hydrochloride 10 mM (C) -1.1 +0.4 +0.0 +0.1 -0.1
no stress control Glycine betaine (C)(N); with TAPS +0.1 -0.3 -0.7 +0.5 +0.1
stress Betaine (C)(N); with MOPS; with chloride -0.7 +0.5 -0.2 +0.3 -0.1
pH Growth at pH9 and (C) Trisodium citrate +0.3 -0.2 -0.9 +0.7 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.3 +0.5 -0.1 -0.9 +0.4
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.3 -0.5 +0.3 +0.4 +0.3
carbon source Inosine (C) +0.5 +0.6 -0.6 +0.4 +0.2
carbon source L-Ornithine (C) +0.8 +0.4 +0.2 +0.6 -0.1
carbon source 4-Guanidinobutyric (C) +0.7 -0.1 +0.5 +0.7 +0.1
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