Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS05355 and PFLU_RS05360 are separated by 545 nucleotidesPFLU_RS05360 and PFLU_RS05365 are separated by 210 nucleotidesPFLU_RS05365 and PFLU_RS05370 overlap by 17 nucleotidesPFLU_RS05370 and PFLU_RS05375 are separated by 5 nucleotides PFLU_RS05355: PFLU_RS05355 - extracellular solute-binding protein, at 1,192,407 to 1,193,582 _RS05355 PFLU_RS05360: PFLU_RS05360 - GGDEF and EAL domain-containing protein, at 1,194,128 to 1,196,464 _RS05360 PFLU_RS05365: PFLU_RS05365 - methylamine utilization protein, at 1,196,675 to 1,197,352 _RS05365 PFLU_RS05370: PFLU_RS05370 - EAL domain-containing protein, at 1,197,336 to 1,199,684 _RS05370 PFLU_RS05375: PFLU_RS05375 - DUF3034 family protein, at 1,199,690 to 1,200,553 _RS05375
Group Condition PFLU_RS05355 PFLU_RS05360 PFLU_RS05365 PFLU_RS05370 PFLU_RS05375
stress Betaine (C)(N); with MOPS; with chloride +0.0 +0.1 -0.1 -0.7 -1.2
carbon source Xanthosine (C) -0.2 -0.7 -0.2 -0.3 -0.4
carbon source Shikimic Acid (C) -0.2 -0.2 -0.4 +0.1 -0.7
stress Betaine (C)(N); with MOPS; with chloride -0.2 +0.0 +0.3 -0.4 -0.9
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.2 -0.4 -0.1 -0.3 -0.6
stress Betaine (C)(N); with TAPS; with chloride +0.3 -0.5 -0.0 -0.5 -0.3
carbon source Ferulic Acid (C) 1.5 mM -0.3 -0.3 +0.1 -0.1 -0.5
carbon source D,L-Malic Acid (C) +0.2 -0.2 -0.1 +0.0 -0.8
carbon source p-Coumaric (C) 5 mM -0.3 +0.3 -0.1 -0.2 -0.7
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.2 -0.2 +0.2 -0.2 -0.5
nitrogen source NAG (N); with MOPS -0.1 +0.5 -0.3 -0.2 -0.8
carbon source L-Lysine (C) +0.1 -0.3 +0.3 +0.0 -1.0
stress malate (C) and Ammonium chloride (N); with TAPS -0.0 +0.3 -0.3 -0.4 -0.4
stress Betaine (C)(N); with MOPS; with chloride +0.0 -0.4 +0.4 +0.1 -0.9
stress Betaine (C)(N); with MOPS; with chloride -0.1 -0.6 +0.2 +0.3 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.2 -0.9 +0.4 -0.4 -0.0
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.1 -0.1 -0.4 -0.5 +0.3
carbon source L-Ornithine 10 mM (C) +0.4 -0.5 +0.0 -0.3 -0.3
carbon source L-Valine (C) -0.4 -0.4 +0.1 -0.2 +0.3
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.2 +0.4 -0.1 +0.3 -1.0
carbon source L-Carnitine (C) -0.3 -0.4 +0.2 +0.6 -0.5
pH Growth at pH9 and (C) Trisodium citrate -0.0 +0.2 -0.4 -0.4 +0.4
carbon source NAG (C) +0.1 -0.8 +0.1 -0.0 +0.5
carbon source NAG (C) -0.2 -0.5 -0.0 +0.2 +0.5
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.0 +0.3 +0.0 +0.6 -0.6
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.2 +0.0 +0.0 +0.6 -0.5
carbon source L-Arabinose (C) -0.2 -0.1 -0.1 +0.3 +0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.1 +0.3 +0.4 -0.4 +0.4
carbon source Phloretic Acid 2 mM (C) -0.1 -0.2 +0.3 +0.3 +0.6
carbon source propionate 20 mM (C) +0.1 +0.3 +0.5 -0.2 +0.2
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