Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS05040 and PFLU_RS05045 are separated by 390 nucleotidesPFLU_RS05045 and PFLU_RS05050 are separated by 183 nucleotidesPFLU_RS05050 and PFLU_RS05055 are separated by 91 nucleotidesPFLU_RS05055 and PFLU_RS05060 are separated by 37 nucleotides PFLU_RS05040: PFLU_RS05040 - DUF1120 domain-containing protein, at 1,125,457 to 1,126,083 _RS05040 PFLU_RS05045: PFLU_RS05045 - response regulator, at 1,126,474 to 1,127,304 _RS05045 PFLU_RS05050: PFLU_RS05050 - response regulator transcription factor, at 1,127,488 to 1,128,123 _RS05050 PFLU_RS05055: PFLU_RS05055 - nuclear transport factor 2 family protein, at 1,128,215 to 1,128,685 _RS05055 PFLU_RS05060: PFLU_RS05060 - GIY-YIG nuclease family protein, at 1,128,723 to 1,128,998 _RS05060
Group Condition PFLU_RS05040 PFLU_RS05045 PFLU_RS05050 PFLU_RS05055 PFLU_RS05060
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.2 +0.1 -3.8 -0.2 -1.8
carbon source p-Coumaric 2 mM (C) +0.1 -0.1 -3.2 -0.0 -0.8
pH Growth at pH9 and (C) Trisodium citrate -0.6 +0.1 -3.0 -0.1 -0.4
no stress control Glycine betaine (C)(N); with TAPS -0.4 +0.1 -4.0 +0.2 +0.0
carbon source L-Valine (C) -0.1 -0.3 -2.5 +0.3 -1.1
temperature Growth at 25C -1.8 +0.1 -2.3 +0.3 +0.0
carbon source D-Glucuronic (C) -0.6 -0.0 -2.1 -0.4 -0.5
carbon source Inosine (C) -0.6 +0.5 -3.2 -0.2 -0.0
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.9 -0.3 -4.8 +0.5 +0.1
carbon source D-Glucosamine Hydrochloride 10 mM (C) -0.7 +0.1 -1.6 -0.3 -0.6
stress Betaine (C)(N); with MOPS; with chloride +0.3 +0.1 -3.1 +0.1 -0.5
stress Glucose (C) and L-Glutamine (N); with MOPS; with chloride -0.4 +0.3 -3.0 -0.1 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.1 +0.2 -2.5 +0.1 -0.6
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS +0.4 +0.1 -2.0 +0.2 -1.4
pH Growth at pH7 and (C) D-Glucose -2.1 -0.0 -1.3 +0.5 +0.3
nitrogen source nitrate (N); with MOPS -0.9 -0.1 -2.5 +0.1 +0.9
no stress control Glucose (C) and Betaine (N); with TAPS -0.2 +0.2 -2.5 +0.1 +0.1
carbon source Shikimic Acid (C) -0.6 -0.6 -1.5 -0.4 +0.8
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.1 +0.3 -2.6 +0.2 +0.1
carbon source D-Mannitol (C) +0.4 +0.1 -3.4 -0.1 +1.0
temperature Growth at 25C +0.7 +0.1 -1.6 -0.0 -1.0
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.7 -0.3 -1.8 +0.1 -0.3
carbon source Xanthosine (C) +0.3 +0.4 -0.2 +0.2 -2.2
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.3 +0.3 -2.2 -0.4 +1.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.6 -0.4 -1.3 -0.1 +1.0
pH Growth at pH8 and (C) Trisodium citrate +0.2 +0.1 -2.4 -0.1 +1.5
stress L-Glutamine (C)(N); with TAPS; with chloride +0.1 +0.3 -2.0 +0.3 +0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.7 +0.4 -1.2 -0.6 +0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.9 +0.3 -2.0 -0.3 +0.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +1.2 +0.3 -1.9 +0.6 +1.1
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