Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS05005 and PFLU_RS05010 are separated by 6 nucleotidesPFLU_RS05010 and PFLU_RS05015 are separated by 63 nucleotidesPFLU_RS05015 and PFLU_RS05020 are separated by 32 nucleotidesPFLU_RS05020 and PFLU_RS05025 are separated by 44 nucleotides PFLU_RS05005: PFLU_RS05005 - DUF1120 domain-containing protein, at 1,118,360 to 1,119,505 _RS05005 PFLU_RS05010: PFLU_RS05010 - fimbria/pilus outer membrane usher protein, at 1,119,512 to 1,121,971 _RS05010 PFLU_RS05015: PFLU_RS05015 - fimbria/pilus periplasmic chaperone, at 1,122,035 to 1,122,760 _RS05015 PFLU_RS05020: PFLU_RS05020 - DUF1120 domain-containing protein, at 1,122,793 to 1,123,419 _RS05020 PFLU_RS05025: PFLU_RS05025 - DUF1120 domain-containing protein, at 1,123,464 to 1,124,084 _RS05025
Group Condition PFLU_RS05005 PFLU_RS05010 PFLU_RS05015 PFLU_RS05020 PFLU_RS05025
carbon source NAG (C) -0.3 -0.4 -0.2 -3.1 -0.6
temperature shift Temperature shift 10_to_25; with MOPS -0.2 -0.1 -0.2 -3.4 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.5 -0.1 +0.2 -3.6 -0.1
temperature Growth at 30C +0.1 -0.1 -0.5 -3.6 +0.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.3 +0.1 -0.4 -3.6 -0.4
carbon source Quinic Acid (C) -0.5 +0.0 +0.2 -3.1 -0.5
carbon source Inosine (C) -0.3 -0.0 +0.2 -3.1 -0.6
carbon source caffeic 2 mM (C) +0.1 -0.0 +0.3 -2.7 -1.6
stress Betaine (C)(N); with MOPS; with chloride -0.1 -0.1 +0.1 -3.7 -0.0
stress Glucose (C) and L-Glutamine (N); with TAPS; with chloride +0.1 -0.0 +0.1 -3.9 -0.1
stress Betaine (C)(N); with MOPS; with chloride -0.2 +0.0 -0.2 -3.2 -0.1
carbon source Xanthosine (C) -0.0 -0.1 -0.1 -3.1 -0.2
temperature shift Temperature shift 30_to_25; with MOPS -0.3 -0.0 +0.3 -3.5 +0.1
carbon source propionate 20 mM (C) +0.4 +0.1 -0.5 -3.1 -0.3
temperature Growth at 25C -0.0 +0.1 -0.1 -3.0 -0.2
stress L-Glutamine (C)(N); with TAPS; with chloride -0.5 -0.2 +0.1 -3.1 +0.3
no stress control L-Glutamine (C)(N); with TAPS -0.0 -0.1 +0.2 -3.1 -0.2
carbon source L-Valine (C) -1.1 +0.3 -0.1 -2.4 +0.1
carbon source L-Valine (C) -0.7 +0.1 +0.2 -2.7 -0.0
nitrogen source Urea (N); with MOPS +0.3 +0.0 +0.2 -3.5 -0.1
carbon and nitrogen source NAG carbon and (N) +0.1 +0.0 +0.2 -3.3 -0.1
stress L-Glutamine (C)(N); with TAPS; with chloride +0.2 +0.1 +0.1 -3.5 +0.1
carbon source L-Arabinose (C) -0.2 -0.1 +0.1 -2.9 +0.2
stress Betaine (C)(N); with TAPS; with chloride +0.1 -0.1 -0.4 -2.8 +0.4
temperature shift Temperature shift 30_to_21; with MOPS +0.4 -0.1 +0.1 -3.2 +0.1
no stress control Growth with no stress; with MOPS +0.6 +0.1 -0.1 -3.5 +0.2
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS -0.0 +0.2 +0.3 -3.1 +0.3
pH Growth at pH7 and (C) D-Glucose +0.6 -0.0 -0.3 -2.9 +0.2
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.5 -0.1 +0.3 -2.6 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.6 +0.2 +0.4 +2.4 +0.3
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