Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS04990 and PFLU_RS04995 overlap by 11 nucleotidesPFLU_RS04995 and PFLU_RS05000 overlap by 6 nucleotidesPFLU_RS05000 and PFLU_RS05005 are separated by 24 nucleotidesPFLU_RS05005 and PFLU_RS05010 are separated by 6 nucleotides PFLU_RS04990: PFLU_RS04990 - FadR family transcriptional regulator, at 1,115,788 to 1,116,447 _RS04990 PFLU_RS04995: PFLU_RS04995 - CynX/NimT family MFS transporter, at 1,116,437 to 1,117,702 _RS04995 PFLU_RS05000: PFLU_RS05000 - DUF1120 domain-containing protein, at 1,117,697 to 1,118,335 _RS05000 PFLU_RS05005: PFLU_RS05005 - DUF1120 domain-containing protein, at 1,118,360 to 1,119,505 _RS05005 PFLU_RS05010: PFLU_RS05010 - fimbria/pilus outer membrane usher protein, at 1,119,512 to 1,121,971 _RS05010
Group Condition PFLU_RS04990 PFLU_RS04995 PFLU_RS05000 PFLU_RS05005 PFLU_RS05010
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -1.1 +0.0 -0.0 -0.8 -0.0
stress Betaine (C)(N); with MOPS; with chloride -0.4 -0.2 -0.4 -0.6 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.3 -0.3 -0.1 -0.6 +0.0
stress L-Glutamine (C)(N); with TAPS; with chloride -0.3 +0.0 -0.3 -0.5 -0.2
carbon source Xanthosine (C) +0.1 +0.1 -0.0 -1.0 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.5 +0.1 -0.2 -0.6 +0.2
stress Glucose (C) and Betaine (N); with TAPS; with chloride -0.5 +0.1 -0.4 +0.2 -0.2
stress Betaine (C)(N); with MOPS; with chloride -0.6 +0.1 +0.2 -0.2 -0.2
stress Sucrose (C) and Glycine betaine (N); with TAPS; with PEG -0.8 -0.0 +0.2 +0.1 -0.2
nitrogen source NAG (N); with MOPS -0.2 +0.1 -0.6 +0.4 -0.3
carbon source Phloretic Acid 2 mM (C) -1.0 +0.3 +0.2 +0.3 -0.2
pH Growth at pH8 and (C) Trisodium citrate -0.3 -0.1 -0.7 +0.7 -0.0
carbon source NAG (C) +0.5 +0.1 -0.2 -0.3 -0.4
carbon source L-Carnitine (C) +0.1 +0.1 -0.7 +0.4 -0.2
carbon source L-Valine (C) +0.4 +0.4 -0.3 -0.7 +0.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.5 +0.1 +0.1 +0.4 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.1 -0.3 +0.5 -0.5 +0.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.4 +0.3 +0.4 -0.3 -0.0
carbon source L-Valine (C) +0.4 +0.1 +0.4 -1.1 +0.3
carbon source Inosine (C) +0.4 +0.3 -0.3 -0.2 +0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.4 +0.0 -0.5 +0.5 -0.1
no stress control L-Glutamine (C)(N); with MOPS +0.4 -0.2 -0.5 +0.5 +0.2
carbon source propionate 20 mM (C) +0.7 +0.2 +0.3 -0.5 -0.2
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.2 +0.3 +0.5 +0.3 -0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.3 +0.4 +0.4 +0.3 +0.1
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.5 +0.3 -0.4 +0.5 -0.1
stress Betaine (C)(N); with MOPS; with chloride +0.3 -0.2 +0.2 +0.6 +0.2
pH Growth at pH7 and (C) D-Glucose +0.2 +0.4 +0.0 +0.6 -0.0
temperature Growth at 25C +0.2 +0.2 +0.3 +0.5 +0.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.7 +0.4 +0.2 +0.1 -0.1
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