Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS04955 and PFLU_RS04960 are separated by 344 nucleotidesPFLU_RS04960 and PFLU_RS04965 are separated by 72 nucleotidesPFLU_RS04965 and PFLU_RS04970 are separated by 10 nucleotidesPFLU_RS04970 and PFLU_RS04975 are separated by 11 nucleotides PFLU_RS04955: PFLU_RS04955 - alpha/beta hydrolase, at 1,109,430 to 1,110,086 _RS04955 PFLU_RS04960: PFLU_RS04960 - amino acid ABC transporter substrate-binding protein, at 1,110,431 to 1,111,462 _RS04960 PFLU_RS04965: PFLU_RS04965 - amino acid ABC transporter permease, at 1,111,535 to 1,112,716 _RS04965 PFLU_RS04970: PFLU_RS04970 - amino acid ABC transporter permease, at 1,112,727 to 1,113,824 _RS04970 PFLU_RS04975: PFLU_RS04975 - amino acid ABC transporter ATP-binding protein, at 1,113,836 to 1,114,600 _RS04975
Group Condition PFLU_RS04955 PFLU_RS04960 PFLU_RS04965 PFLU_RS04970 PFLU_RS04975
carbon source L-Ornithine (C) -1.3 -2.9 -2.3 -2.3 -3.3
carbon source L-Ornithine (C) -1.5 -2.5 -2.6 -2.4 -2.6
carbon source L-Ornithine 10 mM (C) -1.7 -2.2 -2.3 -2.3 -2.7
carbon source L-Ornithine (C) -1.2 -2.2 -2.2 -2.0 -2.7
carbon source L-Ornithine 10 mM (C) -1.6 -1.5 -1.8 -1.5 -1.3
carbon source L-Ornithine 10 mM (C) -1.0 -0.8 -1.0 -1.1 -1.5
carbon source L-Alanine 15 mM (C) -0.3 -0.4 -0.4 -0.5 -0.6
carbon source L-Alanine 15 mM (C) -0.0 -0.5 -0.7 -0.6 -0.5
carbon source acetate 30 mM (C) +0.3 +0.1 -0.6 +0.1 -1.2
no stress control Glycine betaine (C)(N); with TAPS +0.4 -0.1 -0.2 -0.4 -0.9
carbon source D-Glucosamine Hydrochloride 10 mM (C) +0.5 +0.4 -0.1 -0.6 -1.3
carbon source Phloretic Acid 2 mM (C) -0.1 +0.4 -0.1 -0.6 -0.8
no stress control Glycine betaine (C)(N); with TAPS +0.4 -0.2 -0.3 -0.2 -0.9
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.1 +0.1 -0.4 -0.9 +0.5
carbon source p-Coumaric 2 mM (C) -0.6 +0.4 -0.1 -0.4 +0.4
stress Betaine (C)(N); with TAPS; with chloride +0.3 +0.5 +0.2 -0.0 -1.2
stress Betaine (C)(N); with MOPS; with chloride +0.5 +0.2 +0.3 +0.3 -0.7
carbon source Inosine (C) -0.4 +0.3 -0.2 +0.4 +0.8
stress Betaine (C)(N); with TAPS; with chloride +0.6 +0.0 +0.6 +0.4 -0.7
carbon source pyruvate 20 mM (C) +0.2 +0.5 +0.5 +0.2 -0.6
carbon source propionate 20 mM (C) +0.4 +0.2 +0.2 -0.3 +0.8
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.3 +0.4 +0.4 +0.8 +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.8 -0.2 +0.1 +0.2 +0.8
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.5 -0.0 +0.5 -0.0 +0.9
carbon source L-Valine (C) -0.1 +0.9 +0.7 -0.2 +0.7
carbon source NAG 10 mM (C) +0.2 +0.5 +0.3 +0.5 +0.5
carbon source L-Valine (C) +0.0 +0.5 +0.4 +0.1 +0.9
stress Betaine (C)(N); with TAPS; with chloride +0.5 +0.3 +0.1 +0.3 +0.8
carbon source NAG (C) 10 mM +0.3 +0.4 +0.4 +0.5 +0.5
carbon source NAG (C) 10 mM +0.3 +0.4 +0.4 +0.5 +0.7
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