Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS04815 and PFLU_RS04820 are separated by 10 nucleotidesPFLU_RS04820 and PFLU_RS04825 overlap by 11 nucleotidesPFLU_RS04825 and PFLU_RS04830 are separated by 10 nucleotidesPFLU_RS04830 and PFLU_RS30400 are separated by 79 nucleotides PFLU_RS04815: PFLU_RS04815 - efflux transporter outer membrane subunit, at 1,077,042 to 1,078,553 _RS04815 PFLU_RS04820: PFLU_RS04820 - FUSC family protein, at 1,078,564 to 1,080,741 _RS04820 PFLU_RS04825: PFLU_RS04825 - DUF1656 domain-containing protein, at 1,080,731 to 1,080,931 _RS04825 PFLU_RS04830: PFLU_RS04830 - HlyD family secretion protein, at 1,080,942 to 1,081,805 _RS04830 PFLU_RS30400: PFLU_RS30400 - NAD synthetase, at 1,081,885 to 1,082,112 _RS30400
Group Condition PFLU_RS04815 PFLU_RS04820 PFLU_RS04825 PFLU_RS04830 PFLU_RS30400
carbon source acetate 30 mM (C) -3.9 -3.5 -2.9 -3.4 -1.0
carbon source acetate 30 mM (C) -3.7 -3.7 -3.2 -3.3 +0.3
carbon source acetate 30 mM (C) -2.7 -2.6 -2.5 -2.9 +0.0
temperature Growth at 25C; with MOPS -0.0 -0.2 -2.2 -0.1 -0.2
carbon source Phloretic Acid 2 mM (C) -0.3 +0.3 -1.5 -0.1 -1.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.1 +0.0 -1.0 -0.5 -1.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.1 -0.3 -2.5 +0.1 +0.2
pH Growth at pH9 and (C) Trisodium citrate +0.2 -0.2 +1.2 +0.4 -3.9
temperature shift Temperature shift 30_to_25; with MOPS -0.3 -0.2 -1.5 -0.3 +0.4
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.5 -0.1 -1.6 -0.2 -0.3
no stress control Glycine betaine (C)(N); with MOPS +0.0 +0.3 +0.2 -0.2 -1.9
carbon source L-Valine 10 mM (C) -0.1 +0.2 +0.4 -0.3 -1.8
carbon source Inosine (C) +0.2 +0.3 +0.5 -0.0 -1.7
pH Growth at pH8 and (C) D-Glucose +0.1 +0.3 -1.5 +0.1 +0.7
stress Betaine (C)(N); with TAPS; with chloride -0.3 +0.3 +1.1 -0.2 +0.7
carbon source Ferulic Acid 2 mM (C) +0.5 +0.4 -0.4 +0.1 +1.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.7 +0.5 +0.8 +0.6 -0.3
carbon source p-Coumaric (C) 5 mM +0.7 +0.4 +0.6 +0.6 +0.5
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +1.0 +0.5 +0.8 +0.5 +0.2
carbon source p-Coumaric (C) 5 mM +0.8 +0.6 +0.8 +0.6 +0.3
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.9 +0.5 +0.8 +0.5 +0.6
carbon source Ferulic Acid (C) 1.5 mM +1.2 +0.6 +0.7 +0.4 +0.4
carbon source p-Coumaric (C) 5 mM +0.8 +0.8 +0.7 +0.5 +0.6
carbon source propionate 20 mM (C) +1.1 +1.0 +1.1 +1.0 -0.2
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +1.3 +0.8 +0.8 +0.6 +0.6
carbon source Ferulic Acid (C) 1.5 mM +1.0 +0.7 +1.7 +0.2 +0.6
carbon source propionate (C) +1.2 +0.9 +1.3 +1.1 +0.2
carbon source propionate 20 mM (C) +1.1 +1.1 +2.0 +1.0 -0.4
carbon source propionate (C) +1.1 +1.3 +1.2 +1.0 +0.4
carbon source propionate (C) +1.2 +1.6 +1.3 +1.5 -0.2
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