Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS04390 and PFLU_RS04395 are separated by 10 nucleotidesPFLU_RS04395 and PFLU_RS04400 are separated by 147 nucleotidesPFLU_RS04400 and PFLU_RS04405 are separated by 185 nucleotidesPFLU_RS04405 and PFLU_RS04410 overlap by 1 nucleotides PFLU_RS04390: PFLU_RS04390 - PTS IIA-like nitrogen regulatory protein PtsN, at 990,415 to 990,879 _RS04390 PFLU_RS04395: PFLU_RS04395 - ribosome-associated translation inhibitor RaiA, at 990,890 to 991,195 _RS04395 PFLU_RS04400: PFLU_RS04400 - RNA polymerase factor sigma-54, at 991,343 to 992,836 _RS04400 PFLU_RS04405: PFLU_RS04405 - LPS export ABC transporter ATP-binding protein, at 993,022 to 993,747 _RS04405 PFLU_RS04410: PFLU_RS04410 - lipopolysaccharide transport periplasmic protein LptA, at 993,747 to 994,280 _RS04410
Group Condition PFLU_RS04390 PFLU_RS04395 PFLU_RS04400 PFLU_RS04405 PFLU_RS04410
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. -2.3 N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs N.D. -2.2 N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs N.D. -2.1 N.D. N.D. N.D.
carbon source L-Ornithine 10 mM (C) N.D. -2.1 N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs N.D. -2.0 N.D. N.D. N.D.
carbon source L-Ornithine (C) N.D. -1.9 N.D. N.D. N.D.
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS N.D. -1.9 N.D. N.D. N.D.
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride N.D. -1.8 N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs N.D. -1.6 N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs N.D. -1.6 N.D. N.D. N.D.
carbon source L-Ornithine 10 mM (C) N.D. -1.5 N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs N.D. -1.5 N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs N.D. -1.5 N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs N.D. -1.4 N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs N.D. -1.4 N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs N.D. -1.3 N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs N.D. -1.3 N.D. N.D. N.D.
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS N.D. -1.3 N.D. N.D. N.D.
stress malate (C) and Ammonium chloride (N); with TAPS N.D. -1.3 N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. -1.3 N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs N.D. -1.3 N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs N.D. -1.2 N.D. N.D. N.D.
temperature shift Temperature shift 30_to_34 N.D. -1.2 N.D. N.D. N.D.
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS N.D. -1.2 N.D. N.D. N.D.
carbon source acetate (C) N.D. +1.3 N.D. N.D. N.D.
pH Growth at pH9 and (C) Trisodium citrate N.D. +1.4 N.D. N.D. N.D.
carbon source acetate 30 mM (C) N.D. +1.4 N.D. N.D. N.D.
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS N.D. +1.5 N.D. N.D. N.D.
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS N.D. +2.2 N.D. N.D. N.D.
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS N.D. +2.4 N.D. N.D. N.D.
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