Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS04085 and PFLU_RS04090 overlap by 1 nucleotidesPFLU_RS04090 and PFLU_RS04095 are separated by 10 nucleotidesPFLU_RS04095 and PFLU_RS04100 are separated by 10 nucleotidesPFLU_RS04100 and PFLU_RS04105 are separated by 75 nucleotides PFLU_RS04085: PFLU_RS04085 - ABC transporter ATP-binding protein, at 925,072 to 926,043 _RS04085 PFLU_RS04090: PFLU_RS04090 - ABC transporter ATP-binding protein, at 926,043 to 927,011 _RS04090 PFLU_RS04095: PFLU_RS04095 - ABC transporter permease subunit, at 927,022 to 927,933 _RS04095 PFLU_RS04100: PFLU_RS04100 - ABC transporter permease subunit, at 927,944 to 928,954 _RS04100 PFLU_RS04105: PFLU_RS04105 - ABC transporter substrate-binding protein, at 929,030 to 930,628 _RS04105
Group Condition PFLU_RS04085 PFLU_RS04090 PFLU_RS04095 PFLU_RS04100 PFLU_RS04105
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.7 -0.9 -0.4 -0.9 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.4 -0.8 -0.4 -0.6 -0.2
temperature shift Temperature shift 30_to_34 -0.6 -0.8 -0.3 -0.5 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.6 -1.0 +0.2 -0.2 -0.3
stress Betaine (C)(N); with MOPS; with chloride -0.6 -0.9 +0.1 -0.5 +0.0
carbon source caffeic 2 mM (C) +0.2 -0.5 +0.6 +0.5 +0.3
stress malate (C) and Ammonium chloride (N); with TAPS +0.6 +0.5 +0.5 +0.4 -0.1
carbon source octanoate 10 mM (C) +0.5 +0.7 +0.3 +0.4 +0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.2 +0.9 +0.6 +0.3 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.5 +0.8 +0.5 +0.3 -0.1
stress malate (C) and Ammonium chloride (N); with TAPS +0.5 +0.6 +0.5 +0.5 +0.0
carbon source p-Coumaric (C) 5 mM +0.8 -0.7 +1.2 +0.7 +0.0
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.3 +1.1 +0.4 +0.5 -0.0
carbon source butyrate 20 mM (C) +0.6 +0.6 +0.5 +0.4 +0.2
stress malate (C) and Ammonium chloride (N); with TAPS +0.6 +0.7 +0.6 +0.3 +0.1
carbon source L-Valine (C) +0.2 +1.1 +0.6 +0.5 -0.2
carbon source propionate (C) +0.6 +0.7 +0.5 +0.4 +0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.5 +0.7 +0.5 +0.6 +0.3
carbon source p-Coumaric (C) 5 mM +0.8 +0.5 +0.6 +0.9 -0.2
carbon source p-Coumaric (C) 5 mM +0.6 +0.8 +0.9 +0.6 -0.2
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +1.0 +0.7 +0.4 +0.7 -0.1
carbon source Citraconic 20 mM (C) +0.5 +0.9 +0.6 +0.7 +0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.6 +0.7 +0.8 +0.8 -0.0
carbon source Citraconic 20 mM (C) +0.7 +0.9 +0.7 +0.7 -0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.7 +1.2 +0.7 +0.3 +0.2
carbon source Citraconic 20 mM (C) +0.7 +0.8 +0.8 +0.9 +0.0
carbon source propionate 20 mM (C) +0.8 +0.8 +0.6 +0.8 +0.4
carbon source propionate 20 mM (C) +0.6 +1.1 +0.6 +1.1 +0.1
carbon source propionate 20 mM (C) +1.0 +1.2 +0.5 +0.7 +0.1
carbon source p-Coumaric (C) 5 mM +0.8 +0.9 +1.0 +1.1 +0.2
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