Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS04070 and PFLU_RS04075 are separated by 259 nucleotidesPFLU_RS04075 and PFLU_RS04080 are separated by 98 nucleotidesPFLU_RS04080 and PFLU_RS04085 are separated by 225 nucleotidesPFLU_RS04085 and PFLU_RS04090 overlap by 1 nucleotides PFLU_RS04070: PFLU_RS04070 - peptide chain release factor 3, at 922,396 to 923,979 _RS04070 PFLU_RS04075: PFLU_RS04075 - hypothetical protein, at 924,239 to 924,484 _RS04075 PFLU_RS04080: PFLU_RS04080 - hypothetical protein, at 924,583 to 924,846 _RS04080 PFLU_RS04085: PFLU_RS04085 - ABC transporter ATP-binding protein, at 925,072 to 926,043 _RS04085 PFLU_RS04090: PFLU_RS04090 - ABC transporter ATP-binding protein, at 926,043 to 927,011 _RS04090
Group Condition PFLU_RS04070 PFLU_RS04075 PFLU_RS04080 PFLU_RS04085 PFLU_RS04090
carbon source L-Arabinose (C); with MOPS -3.7 -2.8 +0.2 -0.5 -0.4
nitrogen source NAG (N); with MOPS -3.4 -2.9 -0.1 -0.1 -0.2
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -2.5 -3.7 -0.4 +0.0 -0.1
nitrogen source NAG (N); with MOPS -3.3 -2.1 -0.5 +0.1 -0.1
no stress control Glycine betaine (C)(N); with TAPS -2.0 -3.7 -0.1 -0.1 +0.0
carbon source L-Arabinose (C); with MOPS -3.4 -1.0 -0.5 -0.0 -0.7
carbon and nitrogen source NAG carbon and (N) -3.2 -2.8 +0.4 +0.4 -0.2
stress Sucrose (C) and Ammonium chloride (N); with TAPS; with PEG -2.7 -1.9 -0.1 +0.0 -0.5
carbon source NAG (C) -2.9 -2.8 +0.1 +0.1 +0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -2.2 -2.1 -0.8 +0.2 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.8 -2.9 -0.4 +0.1 +0.1
nitrogen source Urea (N); with MOPS -3.1 -1.6 +0.1 -0.2 +0.1
pH Growth at pH8 and (C) Trisodium citrate -2.6 -2.7 +0.6 +0.5 -0.4
no stress control Glycine betaine (C)(N); with MOPS -1.1 -3.6 +0.1 -0.3 +0.4
no stress control Glucose (C) and Glycine betaine (N); with TAPS -1.7 -2.5 +0.7 -0.2 -0.2
stress Sucrose (C) and Ammonium chloride (N); with TAPS -2.7 -2.0 -0.0 +0.2 +0.6
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS -1.0 -3.6 +0.2 -0.0 +0.7
carbon and nitrogen source NAG carbon and (N); with MOPS -3.6 +1.3 -0.2 -0.3 -0.9
no stress control Growth with no stress -3.5 +0.8 -0.0 -0.2 -0.6
nitrogen source nitrate (N) -3.7 +1.0 -0.4 -0.0 -0.4
carbon source L-Arabinose (C) -3.9 +1.5 -0.1 -0.3 -0.7
temperature Growth at 10C; with MOPS -3.7 +0.9 +0.0 -0.2 -0.3
nitrogen source no extra (N); with MOPS -3.5 +0.6 +0.4 +0.0 -0.7
stress Betaine (C)(N); with MOPS; with chloride -0.3 -2.6 -1.1 -0.1 +0.9
carbon and nitrogen source NAG carbon and (N); with MOPS -3.5 +1.4 +0.3 -0.1 +0.3
pH Growth at pH9 and (C) Trisodium citrate -2.7 +2.7 -0.0 -0.4 -0.1
carbon source p-Coumaric (C) 5 mM +1.1 -2.9 -0.1 +0.8 +0.5
carbon source L-Valine (C) +1.2 -2.4 -0.2 +0.2 +1.1
carbon source D-Glucosamine Hydrochloride 10 mM (C) +2.7 +1.1 -1.0 -0.3 -0.3
stress Betaine (C)(N); with MOPS; with chloride -0.3 +2.9 +0.7 -0.4 +0.8
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