Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS03935 and PFLU_RS03940 overlap by 4 nucleotidesPFLU_RS03940 and PFLU_RS03945 overlap by 4 nucleotidesPFLU_RS03945 and PFLU_RS03950 are separated by 202 nucleotidesPFLU_RS03950 and PFLU_RS03955 are separated by 36 nucleotides PFLU_RS03935: PFLU_RS03935 - dephospho-CoA kinase, at 889,402 to 890,025 _RS03935 PFLU_RS03940: PFLU_RS03940 - prepilin peptidase, at 890,022 to 890,888 _RS03940 PFLU_RS03945: PFLU_RS03945 - type II secretion system F family protein, at 890,885 to 892,093 _RS03945 PFLU_RS03950: PFLU_RS03950 - pilin, at 892,296 to 892,709 _RS03950 PFLU_RS03955: PFLU_RS03955 - O-antigen ligase family protein, at 892,746 to 894,146 _RS03955
Group Condition PFLU_RS03935 PFLU_RS03940 PFLU_RS03945 PFLU_RS03950 PFLU_RS03955
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. -0.4 -0.5 -0.4 -0.3
stress Betaine (C)(N); with TAPS; with chloride N.D. -0.2 -0.1 -1.0 +0.0
no stress control Growth with no stress; with MOPS N.D. -0.6 -0.1 -0.6 +0.2
carbon source 4-Guanidinobutyric (C) N.D. +0.2 -0.3 -0.2 -0.6
carbon source 4-hydroxyphenylacetic 2 mM (C) N.D. -0.9 -0.1 +0.3 -0.1
carbon source 4-Aminobutyric (C) N.D. -1.0 +0.1 -0.1 +0.4
nitrogen source NAG (N); with MOPS N.D. +0.4 -0.4 -0.4 -0.2
carbon source 4-Acetoxy-3-methoxycinnamic 2 mM (C) N.D. -0.7 -0.1 +0.6 -0.1
carbon source L-Valine (C) N.D. -0.2 -0.4 +0.6 -0.2
stress Betaine (C)(N); with MOPS; with chloride N.D. -0.7 +0.3 +0.0 +0.3
carbon source p-Coumaric (C) 5 mM N.D. -0.2 +0.4 -0.5 +0.3
carbon source L-Valine (C) N.D. -0.6 +0.1 +0.3 +0.4
carbon source NAG (C) N.D. +0.7 -0.4 +0.4 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs N.D. +1.2 -0.1 -0.4 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs N.D. +1.1 +0.2 -0.2 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs N.D. +1.0 +0.3 -0.3 +0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs N.D. +1.0 -0.1 +0.0 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs N.D. +1.1 +0.1 -0.1 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs N.D. +1.0 +0.2 +0.2 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs N.D. +1.0 +0.3 -0.1 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs N.D. +1.1 +0.3 -0.1 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs N.D. +1.2 +0.1 -0.0 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs N.D. +1.2 +0.2 +0.0 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs N.D. +1.2 +0.0 +0.1 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs N.D. +1.5 +0.1 +0.0 -0.0
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS N.D. +0.7 +0.5 +0.1 +0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs N.D. +1.4 +0.2 +0.1 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs N.D. +1.5 +0.2 +0.3 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs N.D. +1.9 -0.0 +0.1 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs N.D. +1.7 +0.1 +0.0 +0.3
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