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Protein
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Fitness for 5 genes in
Pseudomonas fluorescens SBW25-INTG
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS03750 and PFLU_RS03755 are separated by 112 nucleotides
PFLU_RS03755 and PFLU_RS03760 are separated by 101 nucleotides
PFLU_RS03760 and PFLU_RS31400 overlap by 26 nucleotides
PFLU_RS31400 and PFLU_RS03765 overlap by 21 nucleotides
PFLU_RS03750: PFLU_RS03750 - TonB-dependent siderophore receptor, at 855,451 to 857,547
_RS03750
PFLU_RS03755: PFLU_RS03755 - PDZ domain-containing protein, at 857,660 to 858,814
_RS03755
PFLU_RS03760: PFLU_RS03760 - Nif3-like dinuclear metal center hexameric protein, at 858,916 to 859,674
_RS03760
PFLU_RS31400: PFLU_RS31400 - hypothetical protein, at 859,649 to 859,831
_RS31400
PFLU_RS03765: PFLU_RS03765 - sulfate adenylyltransferase subunit CysD, at 859,811 to 860,728
_RS03765
Group
Condition
PFLU
_RS03750
PFLU
_RS03755
PFLU
_RS03760
PFLU
_RS31400
PFLU
_RS03765
stress
Glucose (C) and Ammonium chloride (N); with MOPS; with chloride
+0.1
-3.5
-0.2
-0.5
-3.2
stress
Glucose (C) and Ammonium chloride (N); with MOPS; with chloride
-0.1
-3.5
-0.2
-0.3
-2.6
stress
Glucose (C) and Betaine (N); with TAPS; with chloride
-0.2
-1.2
-0.3
-1.0
-3.9
stress
Betaine (C)(N); with TAPS; with chloride
-0.1
-2.8
-0.4
-0.2
-3.0
stress
Glucose (C) and Ammonium chloride (N); with MOPS; with chloride
-0.0
-3.1
+0.2
-0.4
-2.7
stress
Glucose (C) and Betaine (N); with TAPS; with chloride
+0.0
-0.6
-0.8
-0.2
-4.2
stress
Glucose (C) and Ammonium chloride (N); with MOPS; with chloride
-0.1
-3.2
+0.0
+0.1
-2.5
stress
L-Glutamine (C)(N); with MOPS; with chloride
-0.0
-1.9
+0.1
-0.4
-3.2
stress
Glucose (C) and Ammonium chloride (N); with MOPS; with chloride
-0.3
-2.5
-0.2
-0.8
-1.6
stress
Betaine (C)(N); with TAPS; with chloride
-0.1
-2.6
-0.6
-0.4
-1.7
stress
Betaine (C)(N); with MOPS; with chloride
-0.1
-3.2
-0.1
-0.5
-1.5
stress
L-Glutamine (C)(N); with TAPS; with chloride
+0.1
-0.9
-0.0
-1.0
-3.4
stress
Glucose (C) and Ammonium chloride (N); with MOPS; with chloride
+0.0
-2.9
-0.5
-0.2
-1.7
pH
Growth at pH9 and (C) Trisodium citrate
+0.1
+0.1
+0.4
-2.4
-3.4
stress
Betaine (C)(N); with MOPS; with chloride
+0.1
-2.9
-0.2
-0.2
-2.0
stress
Betaine (C)(N); with TAPS; with chloride
+0.0
-2.7
+0.2
-0.5
-2.0
stress
Betaine (C)(N); with TAPS; with chloride
+0.3
-2.9
+0.3
-0.8
-1.9
stress
Betaine (C)(N); with TAPS; with chloride
-0.2
-2.3
+0.2
-0.9
-1.8
temperature shift
Temperature shift 30_to_34
-0.3
+0.4
-1.4
-1.5
-2.2
stress
Glucose (C) and Betaine (N); with TAPS; with chloride
-0.3
-0.5
+0.5
-1.1
-3.2
stress
p-Coumaric (C) and Ammonium chloride (N); with TAPS
+0.2
-5.3
-0.6
+0.4
+0.7
pH
Growth at pH8 and (C) Trisodium citrate
+0.3
+0.3
+0.4
-2.5
-2.8
stress
p-Coumaric (C) and Ammonium chloride (N); with TAPS
-0.1
-4.7
-0.3
-0.0
+0.9
stress
Betaine (C)(N); with TAPS; with chloride
+0.0
-2.1
+0.7
+0.1
-2.5
stress
p-Coumaric (C) and Ammonium chloride (N); with TAPS
+0.1
-5.1
-0.2
+0.4
+1.1
stress
p-Coumaric (C) and Ammonium chloride (N); with TAPS
-0.0
-5.0
-0.4
+0.5
+1.3
stress
p-Coumaric (C) and Ammonium chloride (N); with TAPS
+0.1
-4.9
+0.3
+0.3
+1.0
stress
p-Coumaric (C) and Ammonium chloride (N); with TAPS
-0.1
-5.0
+0.3
+0.5
+1.3
stress
p-Coumaric (C) and Ammonium chloride (N); with TAPS
-0.0
-4.9
-0.1
+0.5
+1.6
stress
p-Coumaric (C) and Ammonium chloride (N); with TAPS
-0.0
-5.1
+0.2
+0.8
+1.6
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