Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS03565 and PFLU_RS03570 are separated by 0 nucleotidesPFLU_RS03570 and PFLU_RS03575 are separated by 11 nucleotidesPFLU_RS03575 and PFLU_RS03580 overlap by 4 nucleotidesPFLU_RS03580 and PFLU_RS30380 are separated by 14 nucleotides PFLU_RS03565: PFLU_RS03565 - EscU/YscU/HrcU family type III secretion system export apparatus switch protein, at 822,111 to 823,208 _RS03565 PFLU_RS03570: PFLU_RS03570 - hypothetical protein, at 823,209 to 823,559 _RS03570 PFLU_RS03575: PFLU_RS03575 - hypothetical protein, at 823,571 to 823,774 _RS03575 PFLU_RS03580: PFLU_RS03580 - EscC/YscC/HrcC family type III secretion system outer membrane ring protein, at 823,771 to 825,912 _RS03580 PFLU_RS30380: PFLU_RS30380 - hypothetical protein, at 825,927 to 826,319 _RS30380
Group Condition PFLU_RS03565 PFLU_RS03570 PFLU_RS03575 PFLU_RS03580 PFLU_RS30380
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.0 -2.3 -1.9 -0.4 -1.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.0 +0.3 -4.5 +0.1 -1.5
carbon source D-Glucosamine Hydrochloride 10 mM (C) +0.1 -3.3 -0.4 +0.2 -2.1
carbon source 4-Acetoxy-3-methoxycinnamic 2 mM (C) -0.2 -0.1 -4.4 +0.2 -0.7
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.1 -1.7 -3.2 +0.1 -0.4
stress Betaine (C)(N); with MOPS; with chloride -0.2 -4.8 +0.2 +0.0 +0.3
carbon source Inosine (C) -0.1 -5.0 +0.5 -0.1 +0.5
carbon source p-Coumaric (C) 5 mM -0.2 +0.7 -3.9 -0.0 -0.7
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.1 -1.1 -2.4 -0.1 -0.6
pH Growth at pH8 and (C) D-Glucose +0.2 +0.5 -5.0 +0.0 +0.3
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.3 -1.9 -0.3 -0.2 -1.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.1 +0.0 -4.3 +0.2 +0.1
carbon source propionate 20 mM (C) -0.1 +0.5 -3.9 +0.0 -0.4
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS +0.0 -3.9 +0.3 +0.4 -0.5
pH Growth at pH7 and (C) D-Glucose +0.0 +1.3 -4.4 -0.2 -0.5
carbon source 4-Hydroxybenzoic Acid 2 mM (C) -0.0 -3.4 +0.5 -0.0 -0.6
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.3 -0.9 -3.4 +0.1 +0.6
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.2 -5.0 +1.6 +0.2 +0.1
carbon source propionate 20 mM (C) -0.2 +0.9 -2.5 -0.3 -0.9
stress Betaine (C)(N); with MOPS; with chloride -0.1 -2.8 +0.2 +0.2 -0.5
no stress control L-Glutamine (C)(N); with MOPS +0.2 -1.7 +0.3 +0.2 -1.7
carbon source L-Valine 10 mM (C) +0.1 -2.8 +1.4 +0.1 -1.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.1 +1.0 -1.8 -0.2 -1.0
stress Betaine (C)(N); with TAPS; with chloride +0.1 +1.0 -3.2 +0.3 +0.1
carbon source octanoate 10 mM (C) -0.0 -1.9 +1.8 -0.2 -0.3
stress Betaine (C)(N); with MOPS; with chloride -0.2 -3.2 +2.3 +0.0 +0.6
carbon source L-Valine (C) -0.1 +0.9 -2.1 -0.1 +0.9
carbon source Shikimic Acid (C) +0.1 +1.8 +0.5 -0.3 -1.4
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.1 +2.1 +0.7 -0.4 -0.8
carbon source Inosine (C) +0.6 +1.4 +1.7 +0.0 +0.3
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