Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS03275 and PFLU_RS03280 are separated by 136 nucleotidesPFLU_RS03280 and PFLU_RS03285 are separated by 102 nucleotidesPFLU_RS03285 and PFLU_RS03290 are separated by 194 nucleotidesPFLU_RS03290 and PFLU_RS03295 are separated by 137 nucleotides PFLU_RS03275: PFLU_RS03275 - LysR family transcriptional regulator, at 754,631 to 755,557 _RS03275 PFLU_RS03280: PFLU_RS03280 - helix-turn-helix transcriptional regulator, at 755,694 to 756,383 _RS03280 PFLU_RS03285: PFLU_RS03285 - adenosine deaminase, at 756,486 to 757,439 _RS03285 PFLU_RS03290: PFLU_RS03290 - calcium:proton antiporter, at 757,634 to 758,725 _RS03290 PFLU_RS03295: PFLU_RS03295 - 8-oxoguanine deaminase, at 758,863 to 760,221 _RS03295
Group Condition PFLU_RS03275 PFLU_RS03280 PFLU_RS03285 PFLU_RS03290 PFLU_RS03295
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.7 -0.1 -0.2 -0.1 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.1 -0.0 -1.2 +0.2 -0.4
stress Betaine (C)(N); with TAPS; with chloride -0.2 -0.2 -1.0 -0.1 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.6 -0.0 -0.4 +0.2 -0.4
carbon source Phloretic Acid 2 mM (C) -0.6 +0.0 -0.2 -0.1 -0.3
carbon source Phloretic Acid 2 mM (C) +0.5 +0.1 -0.8 -0.5 -0.3
carbon source propionate 20 mM (C) +0.3 -0.2 -0.8 -0.0 -0.3
carbon source L-Valine (C) -0.5 -0.0 +0.1 -0.1 -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.2 -0.0 -0.7 -0.3 -0.3
carbon source propionate 20 mM (C) +0.1 -0.0 -0.6 -0.1 -0.3
carbon source propionate 20 mM (C) -0.1 +0.3 -0.6 +0.1 -0.4
pH Growth at pH6 and (C) D-Glucose -0.1 -0.2 +0.3 -0.2 -0.3
carbon source Xanthosine (C) -0.2 -0.4 +0.5 -0.2 -0.2
stress Betaine (C)(N); with MOPS; with chloride -0.2 +0.0 -0.4 +0.4 +0.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.3 +0.3 -0.4 +0.1 -0.2
no stress control Glycine betaine (C)(N); with TAPS -0.0 -0.1 -0.4 +0.3 +0.4
carbon source NAG (C) -0.1 -0.2 +0.7 +0.0 -0.3
carbon source Inosine (C) +0.1 -0.0 +0.8 -0.4 -0.2
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.4 -0.2 +0.2 +0.2 -0.2
carbon source L-Ornithine 10 mM (C) +0.1 +0.3 -0.3 +0.2 +0.2
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS +0.3 +0.0 +0.4 +0.1 -0.3
carbon source L-Arabinose (C) +0.0 +0.1 +0.7 +0.1 -0.3
carbon source NAG (C) -0.4 +0.0 +0.9 -0.0 +0.3
carbon source Phloretic Acid 2 mM (C) +0.3 +0.3 -0.2 +0.4 -0.1
no stress control Growth with no stress; with MOPS +0.3 +0.1 +0.5 -0.2 +0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.3 +0.5 +0.5 +0.1 -0.1
pH Growth at pH9 and (C) Trisodium citrate +0.1 +0.2 +0.6 +0.2 -0.3
carbon and nitrogen source NAG carbon and (N) -0.1 +0.2 +0.9 -0.0 +0.1
stress Betaine (C)(N); with MOPS; with chloride +0.1 +0.4 +0.5 +0.3 -0.1
carbon source L-Arabinose (C); with MOPS -0.0 +0.1 +0.9 +0.1 +0.1
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