Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS03000 and PFLU_RS31385 are separated by 70 nucleotidesPFLU_RS31385 and PFLU_RS03005 are separated by 31 nucleotidesPFLU_RS03005 and PFLU_RS03010 are separated by 114 nucleotidesPFLU_RS03010 and PFLU_RS03015 are separated by 168 nucleotides PFLU_RS03000: PFLU_RS03000 - MarC family protein, at 689,957 to 690,553 _RS03000 PFLU_RS31385: PFLU_RS31385 - LysR family transcriptional regulator, at 690,624 to 690,779 _RS31385 PFLU_RS03005: PFLU_RS03005 - hybrid sensor histidine kinase/response regulator, at 690,811 to 693,582 _RS03005 PFLU_RS03010: PFLU_RS03010 - phosphoribosylamine--glycine ligase, at 693,697 to 694,989 _RS03010 PFLU_RS03015: PFLU_RS03015 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH, at 695,158 to 696,765 _RS03015
Group Condition PFLU_RS03000 PFLU_RS31385 PFLU_RS03005 PFLU_RS03010 PFLU_RS03015
carbon source L-Valine 10 mM (C) -1.4 N.D. N.D. N.D. N.D.
carbon source L-Valine 10 mM (C) -1.1 N.D. N.D. N.D. N.D.
carbon source L-Valine (C) -1.1 N.D. N.D. N.D. N.D.
carbon source L-Valine (C) -1.0 N.D. N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.9 N.D. N.D. N.D. N.D.
carbon source L-Valine 10 mM (C) -0.9 N.D. N.D. N.D. N.D.
pH Growth at pH9 and (C) Trisodium citrate -0.8 N.D. N.D. N.D. N.D.
carbon source 4-Guanidinobutyric (C) -0.8 N.D. N.D. N.D. N.D.
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.6 N.D. N.D. N.D. N.D.
temperature shift Temperature shift 10_to_25; with MOPS -0.6 N.D. N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.6 N.D. N.D. N.D. N.D.
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.6 N.D. N.D. N.D. N.D.
nitrogen source nitrate (N) -0.6 N.D. N.D. N.D. N.D.
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.5 N.D. N.D. N.D. N.D.
nitrogen source nitrate (N); with MOPS -0.5 N.D. N.D. N.D. N.D.
stress Sucrose (C) and L-Glutamine (N); with MOPS -0.5 N.D. N.D. N.D. N.D.
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.5 N.D. N.D. N.D. N.D.
carbon source D-Glucose (C) -0.5 N.D. N.D. N.D. N.D.
pH Growth at pH6 and (C) D-Glucose -0.5 N.D. N.D. N.D. N.D.
carbon source p-Coumaric (C) 5 mM +0.4 N.D. N.D. N.D. N.D.
stress L-Glutamine (C)(N); with MOPS; with chloride +0.5 N.D. N.D. N.D. N.D.
carbon source Xanthosine (C) +0.5 N.D. N.D. N.D. N.D.
carbon source Choline chloride 10 mM (C) +0.5 N.D. N.D. N.D. N.D.
carbon source L-Ornithine 10 mM (C) +0.5 N.D. N.D. N.D. N.D.
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.5 N.D. N.D. N.D. N.D.
no stress control Glycine betaine (C)(N); with MOPS +0.6 N.D. N.D. N.D. N.D.
pH Growth at pH9 and (C) Trisodium citrate +0.6 N.D. N.D. N.D. N.D.
carbon source 4-Aminobutyric (C) +0.6 N.D. N.D. N.D. N.D.
carbon source p-Coumaric (C) 5 mM +0.6 N.D. N.D. N.D. N.D.
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.8 N.D. N.D. N.D. N.D.
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