Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS02855 and PFLU_RS02860 are separated by 116 nucleotidesPFLU_RS02860 and PFLU_RS02865 overlap by 4 nucleotidesPFLU_RS02865 and PFLU_RS02870 are separated by 5 nucleotidesPFLU_RS02870 and PFLU_RS02875 are separated by 9 nucleotides PFLU_RS02855: PFLU_RS02855 - urease subunit alpha, at 656,853 to 658,553 _RS02855 PFLU_RS02860: PFLU_RS02860 - urease subunit beta, at 658,670 to 658,975 _RS02860 PFLU_RS02865: PFLU_RS02865 - GNAT family N-acetyltransferase, at 658,972 to 659,505 _RS02865 PFLU_RS02870: PFLU_RS02870 - N-acetyltransferase, at 659,511 to 660,023 _RS02870 PFLU_RS02875: PFLU_RS02875 - urease subunit gamma, at 660,033 to 660,335 _RS02875
Group Condition PFLU_RS02855 PFLU_RS02860 PFLU_RS02865 PFLU_RS02870 PFLU_RS02875
nitrogen source NAG (N); with MOPS -0.5 -3.8 -1.8 -0.9 -2.0
nitrogen source nitrate (N); with MOPS -0.8 -4.1 -0.4 -0.3 -1.2
nitrogen source NAG (N); with MOPS -0.8 -0.8 -0.7 -0.9 -1.8
nitrogen source NAG (N); with MOPS -0.5 -1.7 -0.4 -0.6 -1.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.1 -3.5 -1.1 +0.4 +0.3
no stress control L-Glutamine (C)(N); with TAPS -0.1 -1.5 -1.8 +0.3 -0.6
stress Glucose (C) and Betaine (N); with TAPS; with chloride -0.1 -2.7 -1.0 +0.0 +0.4
nitrogen source Ammonium chloride (N); with MOPS -0.1 -2.4 -0.4 -0.8 +0.3
carbon source 4-Acetoxy-3-methoxycinnamic 2 mM (C) -0.1 -3.2 -0.3 +0.6 -0.5
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.1 -2.6 +0.3 -0.7 -0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -1.0 +0.1 -2.1 +0.5 -0.8
carbon source p-Coumaric 2 mM (C) +0.1 +0.1 -1.8 -0.1 -1.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.6 -2.3 +0.2 +0.8 -1.4
stress Betaine (C)(N); with MOPS; with chloride +0.3 -3.1 +0.2 +0.4 -1.0
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.4 -3.6 +0.1 -0.0 +0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.6 -0.3 -0.8 -0.3 -1.9
no stress control Sucrose (C) and Glycine betaine (N); with MOPS +0.0 -1.4 +0.2 +0.3 -1.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.6 +0.7 -0.3 -0.4 -1.7
carbon source Xanthosine (C) -0.5 +1.5 -0.4 -0.1 -2.6
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.5 -1.3 +0.5 +0.3 -1.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.2 +0.2 -1.9 +0.5 -0.6
stress Betaine (C)(N); with TAPS; with chloride +0.2 -2.0 +0.1 +0.4 -0.7
carbon source Phloretic Acid 2 mM (C) -0.2 -1.9 +1.0 -1.4 +0.7
carbon source 4-Hydroxybenzoic Acid 2 mM (C) +0.5 -2.1 -0.1 -0.7 +0.9
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.2 +1.0 -0.9 -0.4 -1.0
carbon source p-Coumaric (C) 5 mM +0.5 -1.5 -0.4 +0.7 -0.4
carbon source L-Carnitine (C) +0.5 -1.3 -0.5 +1.1 -0.8
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.5 -1.6 +0.3 +1.0 +0.0
stress malate (C) and Ammonium chloride (N); with TAPS +0.5 +1.5 +0.4 -1.0 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.3 +1.6 -0.8 +0.4 +0.5
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