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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25-INTG
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS02195 and PFLU_RS02200 are separated by 48 nucleotides
PFLU_RS02200 and PFLU_RS02205 are separated by 50 nucleotides
PFLU_RS02205 and PFLU_RS02210 are separated by 334 nucleotides
PFLU_RS02210 and PFLU_RS02215 are separated by 277 nucleotides
PFLU_RS02195: PFLU_RS02195 - YdiU family protein, at 489,128 to 490,591
_RS02195
PFLU_RS02200: PFLU_RS02200 - mechanosensitive channel MscK, at 490,640 to 494,023
_RS02200
PFLU_RS02205: PFLU_RS02205 - potassium/proton antiporter, at 494,074 to 495,816
_RS02205
PFLU_RS02210: PFLU_RS02210 - methyl-accepting chemotaxis protein, at 496,151 to 497,776
_RS02210
PFLU_RS02215: PFLU_RS02215 - hypothetical protein, at 498,054 to 498,284
_RS02215
Group
Condition
PFLU
_RS02195
PFLU
_RS02200
PFLU
_RS02205
PFLU
_RS02210
PFLU
_RS02215
carbon source
Inosine (C)
-0.1
-0.7
-0.8
-0.2
-3.1
stress
D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride
+0.1
-0.2
-1.2
+0.5
-4.1
pH
Growth at pH9 and (C) Trisodium citrate
-0.1
+0.1
-2.3
+0.2
-2.5
stress
D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride
+0.1
-0.7
-1.8
+0.2
-2.3
no stress control
Glycine betaine (C)(N); with MOPS
-0.1
-0.3
-0.5
-0.3
-2.8
carbon source
acetate 30 mM (C)
+0.2
-0.5
-1.9
-0.6
-1.2
carbon source
propionate 20 mM (C)
-0.4
-0.3
-1.4
-0.0
-1.9
no stress control
D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS
-0.2
-0.4
-3.1
-0.3
-0.1
carbon source
L-tyrosine 10 mM (C)
-0.1
-0.1
-4.0
+0.1
+0.4
stress
p-Coumaric (C) and Ammonium chloride (N); with TAPS
-0.0
+0.1
-1.8
-0.5
-1.4
carbon source
Xanthosine (C)
-0.1
-0.3
+0.5
-0.2
-3.6
carbon source
2-Deoxy-D-Ribose 10 mM (C)
-0.6
-0.1
-0.8
+0.2
-2.4
pH
Growth at pH8 and (C) Trisodium citrate
-0.1
+0.1
-2.0
+0.2
-1.5
carbon source
L-tyrosine 10 mM (C)
-0.2
-0.0
-3.2
+0.2
+0.0
no stress control
D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS
-0.2
-0.2
-3.0
+0.4
-0.1
stress
p-Coumaric (C) and Ammonium chloride (N); with TAPS
-0.2
-0.1
-1.5
+0.3
-1.6
no stress control
p-Coumaric (C) and Ammonium chloride (N); with MOPS
+0.1
+0.1
-1.3
+0.1
-1.9
pH
Growth at pH6 and (C) D-Glucose
+0.4
-0.0
+0.7
-0.1
-3.8
stress
L-Glutamine (C)(N); with MOPS; with chloride
-0.2
+0.3
-0.1
+0.2
-2.7
stress
D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
+0.2
-0.0
-1.3
+0.5
-1.9
pH
Growth at pH9 and (C) Trisodium citrate
+0.2
-0.1
-2.7
+0.3
-0.2
stress
Betaine (C)(N); with MOPS; with chloride
+0.4
+0.2
-0.7
+0.5
-2.3
no stress control
Ferulic (C) and Ammonium chloride (N); with MOPS
-0.2
+0.1
-2.4
+0.2
+0.7
no stress control
D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS
-0.1
-0.3
-2.2
+0.2
+1.2
stress
Glucose (C) and Ammonium chloride (N); with MOPS; with chloride
-0.0
-0.1
+0.9
+0.2
-2.1
no stress control
p-Coumaric (C) and Ammonium chloride (N); with MOPS
-0.1
+0.1
-2.0
+0.4
+1.0
carbon source
Inosine (C)
+0.2
-0.4
-1.3
+0.4
+1.1
carbon source
L-Valine 10 mM (C)
-0.3
+0.2
+3.2
-0.6
-1.8
carbon source
L-Valine 10 mM (C)
-0.2
+0.2
+3.1
-0.2
-1.0
carbon source
L-Valine 10 mM (C)
+0.0
-0.0
+4.2
-0.1
-1.6
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