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Fitness for 5 genes in
Pseudomonas fluorescens SBW25-INTG
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS02090 and PFLU_RS02095 overlap by 4 nucleotides
PFLU_RS02095 and PFLU_RS02100 overlap by 4 nucleotides
PFLU_RS02100 and PFLU_RS02105 overlap by 4 nucleotides
PFLU_RS02105 and PFLU_RS02110 are separated by 33 nucleotides
PFLU_RS02090: PFLU_RS02090 - beta-ketoacyl-[acyl-carrier-protein] synthase family protein, at 471,318 to 472,484
_RS02090
PFLU_RS02095: PFLU_RS02095 - hypothetical protein, at 472,481 to 472,963
_RS02095
PFLU_RS02100: PFLU_RS02100 - class I SAM-dependent methyltransferase, at 472,960 to 473,709
_RS02100
PFLU_RS02105: PFLU_RS02105 - NAD(P)/FAD-dependent oxidoreductase, at 473,706 to 474,953
_RS02105
PFLU_RS02110: PFLU_RS02110 - MMPL family transporter, at 474,987 to 477,299
_RS02110
Group
Condition
PFLU
_RS02090
PFLU
_RS02095
PFLU
_RS02100
PFLU
_RS02105
PFLU
_RS02110
stress
Betaine (C)(N); with TAPS; with chloride
-0.6
-1.6
+0.3
-0.4
-0.3
carbon source
2-Deoxy-D-Ribose 10 mM (C)
-0.8
-0.6
-0.3
-0.2
-0.2
no stress control
p-Coumaric (C) and Ammonium chloride (N); with MOPS
+0.2
-0.8
-0.4
-0.7
-0.4
carbon source
D-Xylose (C)
+0.1
-0.9
-0.3
-0.4
-0.3
carbon source
p-Coumaric 2 mM (C)
-0.5
-0.9
+0.1
-0.3
-0.3
carbon source
Xanthosine (C)
-0.6
-0.8
-0.5
+0.1
+0.1
carbon source
Ferulic Acid 2 mM (C)
-0.1
-1.3
-0.2
-0.2
+0.2
no stress control
D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS
-0.2
-1.0
+0.3
-0.5
+0.0
stress
Glucose (C) and Ammonium chloride (N); with MOPS; with chloride
+0.1
-1.4
+0.3
-0.6
+0.3
no stress control
4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS
+0.2
-1.6
+0.1
+0.2
-0.1
no stress control
L-Glutamine (C)(N); with TAPS
+0.0
-1.6
-0.2
+0.3
+0.1
carbon source
4-Aminobutyric (C)
+0.4
-0.7
-0.1
-0.4
-0.5
pH
Growth at pH9 and (C) Trisodium citrate
-0.6
-0.9
-0.1
+1.1
-0.4
pH
Growth at pH6 and (C) D-Glucose
-0.1
-1.1
+0.5
+0.3
-0.1
pH
Growth at pH8 and (C) Trisodium citrate
+0.3
+0.7
-0.6
-0.7
-0.0
carbon source
Inosine (C)
+0.1
-0.3
-0.9
+0.6
+0.3
carbon source
L-Lactate (C)
+0.4
+0.5
-0.2
-0.5
-0.4
stress
Glucose (C) and L-Glutamine (N); with MOPS; with chloride
+0.3
-0.7
-0.2
+0.6
-0.2
stress
Glucose (C) and Ammonium chloride (N); with MOPS; with chloride
-0.4
+0.0
+0.4
-0.6
+0.6
nitrogen source
nitrate (N); with MOPS
+0.3
-0.6
+0.1
+0.6
-0.4
carbon source
NAG (C)
+0.5
-0.9
-0.3
+0.6
+0.3
carbon source
acetate 30 mM (C)
-0.8
+0.4
+0.2
+0.4
+0.1
no stress control
p-Coumaric (C) and Ammonium chloride (N); with MOPS
-0.4
+1.1
+0.1
-0.6
+0.0
stress
Glucose (C) and Ammonium chloride (N); with MOPS; with chloride
-0.9
+1.0
-0.3
+0.1
+0.5
stress
Glucose (C) and Ammonium chloride (N); with MOPS; with chloride
+0.1
-0.7
+0.1
+0.4
+0.7
carbon source
p-Coumaric (C) 5 mM
+0.3
+0.3
+0.4
+0.4
-0.5
stress
p-Coumaric (C) and Ammonium chloride (N); with TAPS
+0.2
+0.9
-0.2
+0.8
-0.3
carbon source
L-Isoleucine (C)
+0.3
+0.7
-0.2
+0.8
+0.0
stress
Betaine (C)(N); with MOPS; with chloride
+0.1
+1.3
-0.2
+0.6
+0.2
carbon and nitrogen source
NAG carbon and (N)
-0.2
+1.8
+0.3
+1.0
+0.1
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