Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS01575 and PFLU_RS01580 are separated by 86 nucleotidesPFLU_RS01580 and PFLU_RS01585 are separated by 103 nucleotidesPFLU_RS01585 and PFLU_RS01590 overlap by 4 nucleotidesPFLU_RS01590 and PFLU_RS01595 overlap by 4 nucleotides PFLU_RS01575: PFLU_RS01575 - hypothetical protein, at 353,986 to 354,543 _RS01575 PFLU_RS01580: PFLU_RS01580 - tRNA-Phe, at 354,630 to 354,705 _RS01580 PFLU_RS01585: PFLU_RS01585 - oxidative damage protection protein, at 354,809 to 355,081 _RS01585 PFLU_RS01590: PFLU_RS01590 - A/G-specific adenine glycosylase, at 355,078 to 356,145 _RS01590 PFLU_RS01595: PFLU_RS01595 - AsmA family protein, at 356,142 to 358,352 _RS01595
Group Condition PFLU_RS01575 PFLU_RS01580 PFLU_RS01585 PFLU_RS01590 PFLU_RS01595
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.8 N.D. -3.2 -0.5 -3.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.3 N.D. -3.9 -0.1 -3.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.2 N.D. -2.5 +0.2 -2.6
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.0 N.D. -2.3 -0.1 -2.7
stress Glucose (C) and Glycine betaine (N); with TAPS; with chloride -0.0 N.D. -3.3 +0.1 -1.4
stress Glucose (C) and Glycine betaine (N); with TAPS; with chloride +0.0 N.D. -2.7 -0.1 -1.8
stress Glucose (C) and Glycine betaine (N); with TAPS; with chloride +0.0 N.D. -2.8 +0.1 -1.6
stress Glucose (C) and Glycine betaine (N); with TAPS; with chloride +0.0 N.D. -2.4 +0.1 -1.9
no stress control Glucose (C) and Glycine betaine (N); with MOPS -0.0 N.D. -4.1 +0.1 +0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.1 N.D. -1.8 -0.0 -1.9
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.5 N.D. -1.9 +0.1 -2.2
no stress control Glucose (C) and Glycine betaine (N); with TAPS -0.0 N.D. -3.4 +0.1 -0.2
stress Betaine (C)(N); with MOPS; with chloride +0.3 N.D. -3.3 -0.2 -0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.1 N.D. -1.4 -0.0 -1.9
no stress control Glucose (C) and Glycine betaine (N); with MOPS -0.1 N.D. -3.5 +0.1 +0.0
stress Glucose (C) and Glycine betaine (N); with MOPS; with chloride -0.0 N.D. -3.0 -0.1 -0.3
no stress control Glycine betaine (C)(N); with MOPS -0.1 N.D. -3.4 -0.0 +0.2
stress Glucose (C) and Glycine betaine (N); with MOPS; with chloride -0.0 N.D. -3.3 +0.1 -0.2
stress Glucose (C) and Glycine betaine (N); with MOPS; with chloride +0.0 N.D. -2.9 +0.0 -0.4
no stress control Glycine betaine (C)(N); with TAPS +0.0 N.D. -3.3 +0.1 -0.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.1 N.D. -1.1 +0.2 -2.1
stress Betaine (C)(N); with MOPS; with chloride +0.3 N.D. -3.1 -0.3 -0.0
stress L-Glutamine (C)(N); with TAPS; with chloride +0.0 N.D. -2.1 +0.3 -1.3
no stress control Glycine betaine (C)(N); with TAPS +0.0 N.D. -3.4 -0.1 +0.3
no stress control Glycine betaine (C)(N); with MOPS +0.1 N.D. -3.1 +0.1 -0.1
carbon source L-Arabinose (C); with MOPS +0.2 N.D. -2.6 -0.1 -0.5
stress L-Glutamine (C)(N); with TAPS; with chloride -0.1 N.D. -1.6 +0.2 -1.4
no stress control Glucose (C) and Glycine betaine (N); with MOPS +0.1 N.D. -3.0 +0.3 -0.1
carbon source Choline chloride 10 mM (C) +0.4 N.D. -2.3 -0.1 -0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.3 N.D. -2.1 +0.5 -0.5
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