Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS01500 and PFLU_RS01505 are separated by 17 nucleotidesPFLU_RS01505 and PFLU_RS01510 are separated by 12 nucleotidesPFLU_RS01510 and PFLU_RS01515 are separated by 176 nucleotidesPFLU_RS01515 and PFLU_RS01520 are separated by 241 nucleotides PFLU_RS01500: PFLU_RS01500 - cell division protein FtsQ, at 338,465 to 339,130 _RS01500 PFLU_RS01505: PFLU_RS01505 - MBOAT family protein, at 339,148 to 340,563 _RS01505 PFLU_RS01510: PFLU_RS01510 - cell division protein FtsQ, at 340,576 to 341,700 _RS01510 PFLU_RS01515: PFLU_RS01515 - cellulose synthase operon protein YhjQ, at 341,877 to 342,812 _RS01515 PFLU_RS01520: PFLU_RS01520 - methyltransferase, at 343,054 to 344,241 _RS01520
Group Condition PFLU_RS01500 PFLU_RS01505 PFLU_RS01510 PFLU_RS01515 PFLU_RS01520
carbon source 2-Deoxy-D-Ribose 10 mM (C) -1.8 +0.1 -0.5 -0.4 -0.3
carbon source 4-Aminobutyric (C) -1.9 -0.2 +0.1 -0.6 -0.1
carbon source 4-Guanidinobutyric (C) -2.3 +0.1 -0.0 +0.3 +0.2
nitrogen source nitrate (N); with MOPS -2.0 +0.3 +0.1 +0.1 -0.0
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -1.8 +0.2 +0.1 -0.5 +0.4
stress Betaine (C)(N); with MOPS; with chloride -1.5 +0.1 +0.5 -0.8 +0.0
carbon source Shikimic Acid (C) -0.8 +0.3 +0.3 -0.9 -0.2
no stress control Glucose (C) and L-Glutamine (N); with TAPS +0.1 +0.2 +0.3 -1.9 +0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -1.7 +0.3 +0.3 +0.0 +0.1
stress Glucose (C) and Betaine (N); with TAPS; with chloride -1.1 +0.1 +0.4 -0.5 +0.1
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.9 +0.2 -0.6 -1.3 +0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.7 +0.2 +0.4 -1.0 +0.4
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +1.0 -0.2 -0.5 -0.8 +0.0
stress Growth with Chloride 200 mM; with MOPS -1.5 +0.2 +0.5 +0.4 -0.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.9 +0.2 -0.2 -1.0 -0.2
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +1.1 +0.4 +0.1 -0.9 -0.5
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +1.1 +0.1 -0.1 -1.0 +0.3
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +1.0 +0.1 -0.8 +0.5 -0.2
carbon source NAG (C) +0.5 +0.4 +0.8 -0.5 -0.5
carbon source p-Coumaric 2 mM (C) +0.1 +0.9 +0.8 -0.8 -0.1
stress Betaine (C)(N); with TAPS; with chloride +0.8 +0.6 +0.6 -0.9 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +1.0 +0.4 +0.5 -0.3 -0.1
carbon source L-Carnitine (C) +0.8 -0.2 +0.8 +0.7 -0.4
pH Growth at pH9 and (C) Trisodium citrate +1.1 +0.4 +0.7 -0.1 +0.2
stress Betaine (C)(N); with TAPS; with chloride +1.2 +0.5 +0.3 +0.3 -0.0
carbon source L-Alanine 15 mM (C) +1.0 +0.4 +0.7 +0.2 +0.0
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS +1.0 +0.8 +0.8 -0.1 +0.2
stress Betaine (C)(N); with TAPS; with chloride +1.5 +0.5 +0.4 +0.5 +0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +1.0 +0.2 +0.6 +1.0 +0.4
carbon source p-Coumaric 2 mM (C) +0.9 +0.7 +1.2 +0.4 +0.0
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