Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS01155 and PFLU_RS01160 are separated by 244 nucleotidesPFLU_RS01160 and PFLU_RS01165 are separated by 116 nucleotidesPFLU_RS01165 and PFLU_RS01170 are separated by 40 nucleotidesPFLU_RS01170 and PFLU_RS01175 overlap by 11 nucleotides PFLU_RS01155: PFLU_RS01155 - efflux RND transporter permease subunit, at 253,205 to 256,270 _RS01155 PFLU_RS01160: PFLU_RS01160 - glycoside hydrolase, at 256,515 to 258,692 _RS01160 PFLU_RS01165: PFLU_RS01165 - class I SAM-dependent methyltransferase, at 258,809 to 259,435 _RS01165 PFLU_RS01170: PFLU_RS01170 - ABC transporter permease, at 259,476 to 260,120 _RS01170 PFLU_RS01175: PFLU_RS01175 - ATP-binding cassette domain-containing protein, at 260,110 to 261,225 _RS01175
Group Condition PFLU_RS01155 PFLU_RS01160 PFLU_RS01165 PFLU_RS01170 PFLU_RS01175
carbon source 4-Aminobutyric (C) -0.0 -0.1 -0.1 -0.4 -1.2
stress Betaine (C)(N); with MOPS; with chloride -0.0 +0.2 -0.2 -1.2 -0.4
carbon source L-Arabinose (C); with MOPS -0.4 +0.0 -0.2 -0.7 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.1 +0.1 -0.6 -1.0 -0.2
carbon source Sucrose 5 mM (C) -0.1 -0.3 +0.3 -0.3 -0.5
pH Growth at pH7 and (C) D-Glucose +0.0 +0.2 -0.1 -0.5 -0.6
carbon source L-Valine (C) +0.1 +0.2 -0.2 -0.6 -0.3
carbon source Choline chloride 10 mM (C) +0.0 -0.2 -0.8 +0.3 -0.1
stress Betaine (C)(N); with TAPS; with chloride +0.0 +0.3 -0.3 -0.9 +0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.1 +0.4 -0.3 -0.1 -0.6
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.1 -0.1 -0.6 +0.6 -0.6
carbon source p-Coumaric 2 mM (C) -0.1 -0.2 -0.1 -0.6 +0.6
carbon source Ferulic Acid (C) 1.5 mM -0.1 +0.1 -0.1 +0.5 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.1 -0.3 -0.5 +0.5 +0.1
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.5 +0.0 +0.4 +0.7 -1.0
carbon source Phloretic Acid 2 mM (C) -0.4 -0.2 -0.1 +0.6 -0.2
stress L-Glutamine (C)(N); with MOPS; with chloride +0.2 +0.0 +0.1 -0.8 +0.3
carbon source caffeic 2 mM (C) +0.2 -0.1 +0.1 +0.4 -0.8
carbon source 4-Aminobutyric (C) +0.3 +0.1 +0.1 -0.8 +0.4
carbon source Phloretic Acid 2 mM (C) -0.1 -0.3 +0.4 +0.6 -0.5
carbon and nitrogen source NAG carbon and (N) +0.1 -0.3 -0.3 -0.1 +0.8
carbon source L-Ornithine 10 mM (C) +0.1 -0.3 +0.5 -0.3 +0.3
no stress control Glycine betaine (C)(N); with TAPS -0.0 +0.3 -0.4 +0.6 -0.1
pH Growth at pH9 and (C) Trisodium citrate +0.1 +0.2 -0.2 -0.4 +0.8
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.2 -0.1 -0.3 +0.5 +0.4
carbon source L-Valine 10 mM (C) +0.0 -0.4 +0.0 +0.7 +0.4
stress Betaine (C)(N); with MOPS; with chloride +0.0 +0.2 +0.2 +0.7 -0.3
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.1 -0.3 +0.2 +1.0 +0.1
carbon source L-Carnitine (C) +0.3 +0.3 +0.4 +0.4 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.1 -0.0 +0.2 +0.8 +0.5
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