Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS01035 and PFLU_RS01040 are separated by 155 nucleotidesPFLU_RS01040 and PFLU_RS01045 overlap by 30 nucleotidesPFLU_RS01045 and PFLU_RS01050 are separated by 108 nucleotidesPFLU_RS01050 and PFLU_RS01055 are separated by 224 nucleotides PFLU_RS01035: PFLU_RS01035 - LysR family transcriptional regulator, at 231,095 to 232,039 _RS01035 PFLU_RS01040: PFLU_RS01040 - TonB-dependent receptor, at 232,195 to 234,510 _RS01040 PFLU_RS01045: PFLU_RS01045 - CynX/NimT family MFS transporter, at 234,481 to 235,668 _RS01045 PFLU_RS01050: PFLU_RS01050 - LysR family transcriptional regulator, at 235,777 to 236,643 _RS01050 PFLU_RS01055: PFLU_RS01055 - energy transducer TonB, at 236,868 to 237,683 _RS01055
Group Condition PFLU_RS01035 PFLU_RS01040 PFLU_RS01045 PFLU_RS01050 PFLU_RS01055
no stress control Glycine betaine (C)(N); with TAPS +0.0 -0.1 -0.8 -0.3 -0.5
pH Growth at pH8 and (C) Trisodium citrate -0.1 -0.3 -1.0 -0.2 -0.1
temperature shift Temperature shift 10_to_25; with MOPS -0.4 -0.0 -0.8 -0.3 -0.0
carbon source L-Alanine 15 mM (C) +0.0 +0.0 -0.1 -0.3 -1.1
carbon source m-Inositol (C) +0.1 +0.1 -0.8 -0.5 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.1 +0.2 -0.7 -0.3 -0.5
carbon source 4-Guanidinobutyric (C) -0.5 +0.0 +0.5 -0.5 -0.7
stress malate (C) and Ammonium chloride (N); with TAPS -0.4 +0.0 +0.2 -0.4 -0.3
no stress control Glycine betaine (C)(N); with MOPS +0.2 -0.0 -0.9 -0.2 -0.0
carbon source p-Coumaric 2 mM (C) -0.8 +0.0 -0.3 -0.2 +0.4
stress Betaine (C)(N); with MOPS; with chloride -0.5 +0.2 +0.1 -0.0 -0.6
carbon source Inosine (C) +0.5 +0.1 -0.5 -0.5 -0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.3 +0.2 -0.5 -0.2 +0.5
temperature Growth at 25C -0.4 -0.0 +0.5 -0.4 -0.1
temperature Growth at 25C +0.5 +0.1 -0.6 -0.4 +0.1
carbon source p-Coumaric 2 mM (C) +0.2 -0.0 -0.7 +0.0 +0.4
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.3 -0.2 +0.5 +0.2 -0.4
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.3 +0.1 +0.3 +0.6 -0.7
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.3 +0.1 +0.3 +0.4 -0.4
stress Betaine (C)(N); with MOPS; with chloride +0.3 +0.0 -0.2 -0.4 +0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.3 -0.0 +0.5 -0.1 -0.5
stress L-Glutamine (C)(N); with TAPS; with chloride -0.1 +0.0 +0.6 +0.5 -0.8
carbon source Phloretic Acid 2 mM (C) +0.1 -0.1 +0.4 -0.4 +0.3
carbon source 4-hydroxyphenylacetic 2 mM (C) +0.5 -0.0 -0.3 -0.2 +0.4
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.3 -0.0 -0.2 +0.3 +0.7
carbon source L-Valine (C) -0.2 -0.2 +0.3 +0.4 +0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.3 +0.0 +0.1 +0.6 -0.2
pH Growth at pH7 and (C) D-Glucose +0.3 -0.1 +0.5 +0.4 -0.2
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.4 -0.1 -0.2 +0.2 +0.7
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.3 +0.1 -0.3 +0.5 +0.8
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