Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS00965 and PFLU_RS00970 are separated by 83 nucleotidesPFLU_RS00970 and PFLU_RS00975 overlap by 6 nucleotidesPFLU_RS00975 and PFLU_RS00980 are separated by 26 nucleotidesPFLU_RS00980 and PFLU_RS00985 are separated by 100 nucleotides PFLU_RS00965: PFLU_RS00965 - DUF962 domain-containing protein, at 216,953 to 217,480 _RS00965 PFLU_RS00970: PFLU_RS00970 - Crp/Fnr family transcriptional regulator, at 217,564 to 218,250 _RS00970 PFLU_RS00975: PFLU_RS00975 - hydroxyisourate hydrolase, at 218,245 to 218,655 _RS00975 PFLU_RS00980: PFLU_RS00980 - heme-binding protein, at 218,682 to 219,155 _RS00980 PFLU_RS00985: PFLU_RS00985 - response regulator, at 219,256 to 219,621 _RS00985
Group Condition PFLU_RS00965 PFLU_RS00970 PFLU_RS00975 PFLU_RS00980 PFLU_RS00985
carbon source p-Coumaric 2 mM (C) -0.8 -0.4 -0.5 -1.3 -0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.0 -0.3 -0.1 -1.2 -0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.4 +0.1 -0.1 -0.8 -0.5
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS -0.2 +0.0 -0.7 -0.6 -0.1
carbon source Inosine (C) +0.0 -0.6 -0.7 -0.6 +0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.2 -0.1 -0.8 -0.5 -0.4
stress Glucose (C) and Betaine (N); with TAPS; with chloride -0.1 +0.2 -0.0 -0.9 -0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.2 +0.1 -0.6 -0.8 -0.2
stress Betaine (C)(N); with MOPS; with chloride +0.3 -0.3 -0.2 -0.6 -0.2
carbon source Phloretic Acid 2 mM (C) -0.3 -0.3 +0.5 -0.5 -0.4
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS -0.4 +0.2 -0.6 -0.4 +0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.6 +0.4 -0.4 +0.2 -0.4
stress Betaine (C)(N); with MOPS; with chloride -0.2 +0.1 +0.4 -1.1 +0.1
carbon source Shikimic Acid (C) -0.1 -0.4 -0.9 +0.4 +0.4
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.0 +0.1 -0.5 -0.7 +0.6
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.0 +0.2 +0.4 -0.5 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.1 +0.3 -0.6 -0.4 +0.4
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.4 -0.5 +0.0 -0.1 +0.6
carbon source Inosine (C) +0.0 -0.3 +0.5 -0.6 +0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.6 -0.1 +0.1 -0.5 -0.3
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.3 -0.0 -0.8 +0.8 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.8 -0.1 +0.0 -0.6 -0.1
carbon source 4-Aminobutyric (C) +0.2 +0.3 +0.0 +0.5 -0.8
carbon source Xanthosine (C) +0.2 +0.2 +0.6 -0.9 +0.0
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.1 -0.3 +0.3 -0.4 +0.7
carbon source L-Valine 10 mM (C) -0.3 -0.3 +0.5 -0.1 +0.5
carbon source L-Valine 10 mM (C) +0.5 -0.5 +0.2 +0.2 +0.0
carbon source Phloretic Acid 2 mM (C) -0.5 -0.0 -0.0 +1.3 -0.2
carbon source acetate 30 mM (C) +0.4 -0.2 +0.5 +0.1 +0.3
carbon source Sucrose 5 mM (C) +0.2 +0.2 +0.5 +0.5 +0.2
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