Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS00850 and PFLU_RS00855 are separated by 1493 nucleotidesPFLU_RS00855 and PFLU_RS00860 overlap by 4 nucleotidesPFLU_RS00860 and PFLU_RS30215 are separated by 2 nucleotidesPFLU_RS30215 and PFLU_RS00865 are separated by 973 nucleotides PFLU_RS00850: PFLU_RS00850 - hypothetical protein, at 187,433 to 187,654 _RS00850 PFLU_RS00855: PFLU_RS00855 - SIR2 family protein, at 189,148 to 190,404 _RS00855 PFLU_RS00860: PFLU_RS00860 - ATP-binding protein, at 190,401 to 192,233 _RS00860 PFLU_RS30215: PFLU_RS30215 - KTSC domain-containing protein, at 192,236 to 192,445 _RS30215 PFLU_RS00865: PFLU_RS00865 - hypothetical protein, at 193,419 to 195,041 _RS00865
Group Condition PFLU_RS00850 PFLU_RS00855 PFLU_RS00860 PFLU_RS30215 PFLU_RS00865
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.0 +0.0 -0.1 -6.2 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -1.7 +0.0 -0.1 -4.3 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.6 -0.2 -0.2 -4.3 -0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.0 +0.1 -0.2 -4.9 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -1.0 +0.1 -0.1 -4.9 -0.0
no stress control Glycine betaine (C)(N); with TAPS -4.4 -0.3 -0.3 -0.8 +0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.3 -0.2 -0.0 -4.9 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.9 -0.0 +0.2 -5.0 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.1 -0.1 -0.1 -5.0 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.2 -0.1 +0.0 -5.0 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.3 -0.9 +0.4 -4.7 +0.1
stress Betaine (C)(N); with MOPS; with chloride -1.8 -0.0 -0.0 -3.6 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.3 +0.4 -0.0 -5.2 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.4 -0.6 +0.2 -5.5 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.0 +0.0 -0.1 -5.1 -0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.6 +0.0 -0.0 -4.8 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.8 +0.1 -0.1 -4.1 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.2 +0.0 -0.1 -4.8 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.3 -0.3 -0.1 -4.3 -0.2
stress malate (C) and Ammonium chloride (N); with TAPS +0.2 -0.4 -0.1 -4.7 -0.1
stress Betaine (C)(N); with MOPS; with chloride -1.7 +0.6 -0.4 -3.3 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.3 +0.3 -0.2 -4.8 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.1 -0.5 +0.1 -4.5 -0.0
stress Sucrose (C) and Glycine betaine (N); with TAPS -0.2 +0.0 -0.1 -4.7 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.3 +0.3 -0.2 -4.2 -0.3
temperature Growth at 10C; with MOPS -1.1 +0.2 +0.3 -4.2 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.6 +0.4 +0.0 -4.4 +0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.3 -0.1 +0.1 -4.7 -0.0
temperature Growth at 10C; with MOPS -0.2 +0.1 +0.2 -4.4 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +1.4 -0.4 +0.3 -5.0 -0.0
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