Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS00690 and PFLU_RS00695 are separated by 33 nucleotidesPFLU_RS00695 and PFLU_RS00700 are separated by 376 nucleotidesPFLU_RS00700 and PFLU_RS00705 overlap by 4 nucleotidesPFLU_RS00705 and PFLU_RS00710 overlap by 4 nucleotides PFLU_RS00690: PFLU_RS00690 - membrane protein, at 147,171 to 148,775 _RS00690 PFLU_RS00695: PFLU_RS00695 - DUF2789 domain-containing protein, at 148,809 to 149,063 _RS00695 PFLU_RS00700: PFLU_RS00700 - winged helix DNA-binding protein, at 149,440 to 149,850 _RS00700 PFLU_RS00705: PFLU_RS00705 - FUSC family protein, at 149,847 to 151,925 _RS00705 PFLU_RS00710: PFLU_RS00710 - DUF1656 domain-containing protein, at 151,922 to 152,131 _RS00710
Group Condition PFLU_RS00690 PFLU_RS00695 PFLU_RS00700 PFLU_RS00705 PFLU_RS00710
carbon source octanoate 10 mM (C) -0.0 -2.8 -2.3 -3.5 -3.0
carbon source octanoate 10 mM (C) +0.1 -0.3 -2.9 -4.0 -4.0
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS -0.2 -3.2 -1.0 -2.8 -2.9
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS -0.0 +0.4 -2.7 -3.9 -3.7
carbon source octanoate 10 mM (C) -0.0 +0.0 -3.0 -3.4 -3.4
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS -0.0 +0.9 -2.1 -3.6 -3.9
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS -0.0 +0.4 -1.4 -3.9 -3.4
carbon source Phloretic Acid 2 mM (C) -0.0 -1.2 -0.2 -2.9 -3.2
carbon source Phloretic Acid 2 mM (C) -0.3 +0.3 +0.6 -3.2 -3.4
stress Sucrose (C) and L-Glutamine (N); with MOPS; with PEG +0.0 -4.4 +0.1 -0.1 -0.0
carbon source L-tyrosine 10 mM (C) -0.1 -3.8 -0.3 -0.1 -0.0
carbon source Phloretic Acid 2 mM (C) -0.1 +1.6 +0.1 -2.8 -3.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.2 -4.2 +0.1 +0.0 +0.1
stress Glucose (C) and Glycine betaine (N); with TAPS; with chloride +0.0 -3.5 -0.5 -0.1 +0.0
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.0 -1.2 +0.8 -1.6 -1.3
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.0 -0.3 +0.7 -1.5 -1.9
carbon source 4-Hydroxybenzoic Acid (C) 2.5 mM +0.1 +1.9 -0.9 -1.5 -1.6
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.1 +1.0 +0.8 -1.9 -1.8
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.0 +0.6 +1.1 -1.7 -1.5
carbon source 4-Hydroxyphenylpropionic (C) 5 mM +0.1 +1.5 +0.5 -1.7 -1.9
carbon source 4-Hydroxybenzoic Acid (C) 2.5 mM +0.1 +1.8 -0.7 -1.5 -1.2
carbon source 4-Hydroxyphenylpropionic (C) 5 mM -0.0 +1.7 +0.2 -1.5 -1.7
carbon source 4-Hydroxyphenylpropionic (C) 1.5 mM -0.0 +1.5 +0.4 -1.3 -1.3
carbon source 4-Hydroxyphenylpropionic (C) 1.5 mM -0.1 +1.3 +1.1 -1.3 -1.2
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.0 -2.1 +1.5 +0.5 +0.6
carbon source p-Coumaric (C) 5 mM -0.1 -1.2 +3.3 -0.7 -0.7
carbon source p-Coumaric (C) 5 mM -0.1 +0.3 +2.7 -0.7 -0.9
carbon source p-Coumaric (C) 5 mM -0.0 +1.1 +2.9 -0.8 -0.6
carbon source Ferulic Acid 2 mM (C) -0.0 -0.6 +1.9 +0.9 +0.9
carbon source p-Coumaric (C) 5 mM -0.1 +2.2 +3.0 -1.0 -0.9
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