Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS00650 and PFLU_RS00655 are separated by 99 nucleotidesPFLU_RS00655 and PFLU_RS00660 are separated by 52 nucleotidesPFLU_RS00660 and PFLU_RS00665 are separated by 224 nucleotidesPFLU_RS00665 and PFLU_RS00670 are separated by 15 nucleotides PFLU_RS00650: PFLU_RS00650 - ABC transporter permease, at 137,273 to 138,121 _RS00650 PFLU_RS00655: PFLU_RS00655 - TonB family protein, at 138,221 to 138,847 _RS00655 PFLU_RS00660: PFLU_RS00660 - LysR family transcriptional regulator, at 138,900 to 139,820 _RS00660 PFLU_RS00665: PFLU_RS00665 - MFS transporter, at 140,045 to 141,580 _RS00665 PFLU_RS00670: PFLU_RS00670 - HlyD family secretion protein, at 141,596 to 142,654 _RS00670
Group Condition PFLU_RS00650 PFLU_RS00655 PFLU_RS00660 PFLU_RS00665 PFLU_RS00670
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.6 -1.0 -1.0 +0.2 +0.3
carbon source L-Valine 10 mM (C) -0.5 +0.0 -0.8 -0.2 -0.1
stress Betaine (C)(N); with MOPS; with chloride -0.1 -0.3 -1.3 +0.1 +0.0
pH Growth at pH9 and (C) D-Glucose +0.2 -0.6 -0.3 -0.5 -0.3
carbon source Xanthosine (C) +0.1 -0.3 -0.5 -0.4 -0.2
carbon source Quinic Acid (C) +0.3 -0.7 +0.0 -0.4 -0.4
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.3 -0.7 -0.5 -0.2 +0.5
stress Betaine (C)(N); with MOPS; with chloride -0.5 +0.1 -0.6 -0.3 +0.2
carbon source Shikimic Acid (C) -0.4 +0.0 -0.3 -0.5 +0.3
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.6 -1.5 -0.3 +0.3 +0.0
no stress control Growth with no stress; with MOPS +0.3 -0.3 -0.1 +0.1 -0.7
carbon source p-Coumaric 2 mM (C) -0.3 +0.5 -0.5 -0.4 +0.0
no stress control Glycine betaine (C)(N); with TAPS -0.6 +0.2 -0.2 +0.5 -0.5
carbon and nitrogen source NAG carbon and (N) +0.2 +0.3 -1.5 +0.3 +0.1
pH Growth at pH9 and (C) Trisodium citrate -0.9 -0.2 +0.5 +0.4 -0.4
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.3 -0.5 +0.4 -0.3 -0.3
carbon source caffeic 2 mM (C) -0.6 -0.9 +0.5 +0.2 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.0 -0.8 -0.3 +0.5 +0.4
nitrogen source NAG (N); with MOPS -0.0 +0.7 -1.0 +0.0 +0.2
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS +0.5 -0.7 +0.4 -0.2 -0.1
stress Betaine (C)(N); with MOPS; with chloride -0.4 +0.1 -0.3 -0.1 +0.7
pH Growth at pH8 and (C) Trisodium citrate +0.4 +0.6 +0.0 -0.3 -0.6
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.0 +0.6 -0.7 +0.1 +0.3
carbon source propionate 20 mM (C) -0.2 +0.8 -0.3 +0.0 +0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.4 -0.4 +0.4 +0.2 -0.1
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.0 +0.5 +0.7 +0.0 -0.6
carbon source L-Valine (C) +0.0 +0.8 +0.3 -0.0 -0.4
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.4 -0.4 +0.1 +0.2 +0.4
carbon source 4-Guanidinobutyric (C) +0.3 +0.4 +0.4 -0.4 +0.2
no stress control Glycine betaine (C)(N); with MOPS +0.4 +0.8 -0.2 +0.2 -0.1
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