Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS00595 and PFLU_RS00600 are separated by 109 nucleotidesPFLU_RS00600 and PFLU_RS00605 are separated by 465 nucleotidesPFLU_RS00605 and PFLU_RS00610 are separated by 39 nucleotidesPFLU_RS00610 and PFLU_RS00615 are separated by 19 nucleotides PFLU_RS00595: PFLU_RS00595 - 5S ribosomal RNA, at 124,819 to 124,934 _RS00595 PFLU_RS00600: PFLU_RS00600 - 5S ribosomal RNA, at 125,044 to 125,159 _RS00600 PFLU_RS00605: PFLU_RS00605 - methyl-accepting chemotaxis protein, at 125,625 to 127,505 _RS00605 PFLU_RS00610: PFLU_RS00610 - SRPBCC family protein, at 127,545 to 128,003 _RS00610 PFLU_RS00615: PFLU_RS00615 - non-ribosomal peptide synthetase, at 128,023 to 131,394 _RS00615
Group Condition PFLU_RS00595 PFLU_RS00600 PFLU_RS00605 PFLU_RS00610 PFLU_RS00615
pH Growth at pH8 and (C) Trisodium citrate N.D. -1.3 -0.2 -0.4 -0.2
carbon source propionate 20 mM (C) N.D. -1.3 +0.0 -0.3 -0.1
stress Betaine (C)(N); with MOPS; with chloride N.D. -1.3 -0.1 -0.4 +0.1
carbon source 2-Deoxy-D-Ribose 10 mM (C) N.D. -0.8 -0.1 -0.9 +0.2
stress L-Glutamine (C)(N); with TAPS; with chloride N.D. -0.4 -0.2 -0.5 -0.2
temperature Growth at 25C; with MOPS N.D. -0.7 -0.1 -0.4 -0.0
carbon source Shikimic Acid (C) N.D. -0.9 -0.1 -0.1 -0.2
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS N.D. -1.2 +0.1 -0.1 +0.0
no stress control Glycine betaine (C)(N); with TAPS N.D. -0.7 -0.1 -0.2 -0.2
nitrogen source Ammonium chloride (N); with MOPS N.D. -0.7 -0.3 +0.1 -0.3
temperature shift Temperature shift 30_to_10 N.D. -0.8 -0.0 -0.1 -0.2
carbon source L-Carnitine (C) N.D. -0.6 +0.1 -0.4 -0.1
nitrogen source Ammonium chloride (N) N.D. -0.7 +0.1 -0.3 -0.1
carbon source NAG (C) N.D. -1.0 +0.1 +0.1 -0.2
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride N.D. -0.6 +0.1 -0.4 -0.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride N.D. -1.1 +0.1 +0.2 -0.0
stress Sucrose (C) and Ammonium chloride (N); with MOPS; with PEG N.D. -0.9 +0.1 +0.1 +0.0
nitrogen source nitrate (N); with MOPS N.D. -0.8 +0.2 -0.1 +0.1
no stress control Glucose (C) and nitrate (N); with MOPS N.D. -0.6 -0.1 +0.3 -0.1
no stress control Glycine betaine (C)(N); with MOPS N.D. -0.7 -0.1 +0.3 +0.1
carbon source 4-hydroxyphenylacetic 2 mM (C) N.D. +0.3 +0.2 -0.6 -0.2
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride N.D. +0.3 +0.1 -0.3 -0.4
stress Betaine (C)(N); with MOPS; with chloride N.D. -0.7 -0.0 +0.1 +0.4
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS N.D. +0.6 -0.4 +0.0 -0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride N.D. +0.6 -0.4 -0.4 -0.0
pH Growth at pH8 and (C) D-Glucose N.D. +0.3 +0.2 -0.3 -0.4
no stress control Glycine betaine (C)(N); with TAPS N.D. -0.4 +0.3 +0.3 +0.2
stress Betaine (C)(N); with MOPS; with chloride N.D. +0.9 -0.1 -0.4 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs N.D. -0.1 +0.2 +0.7 +0.3
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS N.D. +0.9 +0.4 -0.0 -0.1
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