Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS00290 and PFLU_RS00295 are separated by 58 nucleotidesPFLU_RS00295 and PFLU_RS00300 are separated by 147 nucleotidesPFLU_RS00300 and PFLU_RS00305 are separated by 35 nucleotidesPFLU_RS00305 and PFLU_RS00310 are separated by 6 nucleotides PFLU_RS00290: PFLU_RS00290 - cytochrome c oxidase subunit II, at 59,196 to 60,323 _RS00290 PFLU_RS00295: PFLU_RS00295 - cytochrome c oxidase subunit I, at 60,382 to 61,968 _RS00295 PFLU_RS00300: PFLU_RS00300 - cytochrome c oxidase assembly protein, at 62,116 to 62,667 _RS00300 PFLU_RS00305: PFLU_RS00305 - cytochrome c oxidase subunit 3, at 62,703 to 63,590 _RS00305 PFLU_RS00310: PFLU_RS00310 - twin transmembrane helix small protein, at 63,597 to 63,800 _RS00310
Group Condition PFLU_RS00290 PFLU_RS00295 PFLU_RS00300 PFLU_RS00305 PFLU_RS00310
no stress control Ferulic (C) and Ammonium chloride (N); with MOPS -2.7 -3.2 -0.7 -2.2 -0.7
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS -2.0 -1.9 -0.0 -1.6 -3.8
no stress control Ferulic (C) and Ammonium chloride (N); with MOPS -2.8 -2.8 -0.5 -1.9 -0.7
no stress control Ferulic (C) and Ammonium chloride (N); with MOPS -2.6 -2.4 -0.4 -1.7 -0.8
no stress control Ferulic (C) and Ammonium chloride (N); with MOPS -2.2 -2.4 -0.4 -2.0 -0.8
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS -1.9 -1.7 -1.1 -1.5 -1.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.0 -1.0 +0.1 -0.6 -3.7
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS -1.7 -1.5 -1.0 -1.6 -0.4
carbon source NAG (C) -0.7 +0.0 -0.8 +0.0 -3.4
carbon source L-Lysine (C) -0.4 -0.0 -0.4 +0.0 -3.8
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.6 -0.6 -0.7 -0.4 -2.3
carbon source NAG (C) -0.2 -0.1 -0.5 +0.1 -3.8
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.2 +0.1 +0.0 -0.3 -4.1
carbon source L-Valine (C) -0.1 -0.2 -0.3 -0.0 -3.7
temperature Growth at 25C -0.2 +0.1 -0.7 +0.0 -3.4
carbon source Phloretic Acid 2 mM (C) +0.1 -0.2 -0.1 -0.3 -3.5
stress Sucrose (C) and Ammonium chloride (N); with TAPS +0.1 -0.1 +0.1 -0.0 -4.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.1 -0.1 -0.4 -0.1 -3.3
no stress control Glucose (C) and L-Glutamine (N); with TAPS +0.1 -0.1 -0.3 -0.0 -3.4
carbon source 4-Acetoxy-3-methoxycinnamic 2 mM (C) -0.2 -0.1 +0.2 +0.0 -3.4
temperature Growth at 30C; with MOPS +0.2 -0.1 +0.2 -0.2 -3.6
pH Growth at pH9 and (C) Trisodium citrate -0.0 -0.0 -0.2 +0.3 -3.5
stress Betaine (C)(N); with MOPS; with chloride -0.0 +0.2 +0.0 +0.3 -3.8
temperature Growth at 25C; with MOPS +0.1 +0.1 +0.4 -0.1 -3.8
stress Betaine (C)(N); with MOPS; with chloride +0.2 -0.0 +0.8 -0.3 -3.8
stress Betaine (C)(N); with MOPS; with chloride +0.0 -0.1 +0.5 -0.3 -3.1
carbon source Phloretic Acid 2 mM (C) -0.0 +0.3 -0.0 +0.4 -3.6
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.2 -0.1 +0.2 +0.2 -3.3
carbon source L-Valine 10 mM (C) -0.1 +0.0 +0.2 +0.4 -3.2
carbon source propionate 20 mM (C) +0.4 +0.4 +0.2 +0.4 -3.2
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