Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS00285 and PFLU_RS00290 are separated by 368 nucleotidesPFLU_RS00290 and PFLU_RS00295 are separated by 58 nucleotidesPFLU_RS00295 and PFLU_RS00300 are separated by 147 nucleotidesPFLU_RS00300 and PFLU_RS00305 are separated by 35 nucleotides PFLU_RS00285: PFLU_RS00285 - hypothetical protein, at 58,180 to 58,827 _RS00285 PFLU_RS00290: PFLU_RS00290 - cytochrome c oxidase subunit II, at 59,196 to 60,323 _RS00290 PFLU_RS00295: PFLU_RS00295 - cytochrome c oxidase subunit I, at 60,382 to 61,968 _RS00295 PFLU_RS00300: PFLU_RS00300 - cytochrome c oxidase assembly protein, at 62,116 to 62,667 _RS00300 PFLU_RS00305: PFLU_RS00305 - cytochrome c oxidase subunit 3, at 62,703 to 63,590 _RS00305
Group Condition PFLU_RS00285 PFLU_RS00290 PFLU_RS00295 PFLU_RS00300 PFLU_RS00305
no stress control Ferulic (C) and Ammonium chloride (N); with MOPS +0.5 -2.7 -3.2 -0.7 -2.2
no stress control Ferulic (C) and Ammonium chloride (N); with MOPS +0.5 -2.8 -2.8 -0.5 -1.9
no stress control Ferulic (C) and Ammonium chloride (N); with MOPS +0.8 -2.2 -2.4 -0.4 -2.0
no stress control Ferulic (C) and Ammonium chloride (N); with MOPS +0.8 -2.6 -2.4 -0.4 -1.7
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS +0.2 -1.7 -1.5 -1.0 -1.6
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS +0.6 -1.9 -1.7 -1.1 -1.5
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS +0.5 -2.0 -1.9 -0.0 -1.6
carbon source L-Ornithine 10 mM (C) -1.8 +0.1 -0.2 -0.6 -0.1
carbon and nitrogen source NAG carbon and (N) -0.1 -0.1 -0.4 -1.2 -0.7
carbon source L-tyrosine (C) 10 mM -1.4 -0.3 -0.3 -0.2 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.8 -0.2 -0.5 -0.5 -0.4
carbon source L-Ornithine 10 mM (C) -1.3 -0.2 -0.1 -0.5 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.2 -0.6 -0.4 -0.9 -0.4
carbon source L-Ornithine (C) -1.3 -0.2 -0.1 -0.3 -0.2
carbon source L-tyrosine (C) 10 mM -1.3 -0.2 -0.2 +0.0 -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.0 -1.0 -0.6 -0.1 -0.3
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.3 -0.6 -0.6 -0.7 -0.4
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.3 -0.6 -0.5 -0.7 -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.6 -1.0 -1.0 +0.1 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.5 -0.3 -0.5 -1.6 +0.0
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.4 -0.7 -0.6 -0.3 -0.6
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.5 -0.2 -0.1 -1.1 -0.3
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.9 -0.1 -0.2 -1.0 -0.0
carbon source Phloretic Acid 2 mM (C) -0.1 -0.7 +0.4 +0.5 -0.6
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +1.1 -0.2 -0.0 -0.7 -0.5
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +1.3 -0.3 +0.2 -0.8 +0.1
carbon source caffeic 2 mM (C) +0.3 +0.3 +0.4 +0.5 -0.4
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +1.7 -0.3 -0.0 +0.3 -0.1
carbon source 4-Hydroxyphenylpropionic (C) 1.5 mM +0.0 +0.8 +0.8 +0.0 +0.4
carbon source 4-Hydroxyphenylpropionic (C) 1.5 mM -0.1 +0.7 +0.8 +0.2 +0.5
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