Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS00140 and PFLU_RS00145 are separated by 31 nucleotidesPFLU_RS00145 and PFLU_RS00150 are separated by 96 nucleotidesPFLU_RS00150 and PFLU_RS00155 are separated by 1 nucleotidesPFLU_RS00155 and PFLU_RS00160 are separated by 48 nucleotides PFLU_RS00140: PFLU_RS00140 - LysR family transcriptional regulator, at 31,491 to 32,441 _RS00140 PFLU_RS00145: PFLU_RS00145 - DOPA 4,5-dioxygenase family protein, at 32,473 to 32,802 _RS00145 PFLU_RS00150: PFLU_RS00150 - 2-dehydro-3-deoxygalactonokinase, at 32,899 to 33,858 _RS00150 PFLU_RS00155: PFLU_RS00155 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 33,860 to 34,480 _RS00155 PFLU_RS00160: PFLU_RS00160 - galactonate dehydratase, at 34,529 to 35,677 _RS00160
Group Condition PFLU_RS00140 PFLU_RS00145 PFLU_RS00150 PFLU_RS00155 PFLU_RS00160
carbon source D-Galactose 10 mM (C) -0.4 -0.5 -4.5 -4.4 -4.3
carbon source D-Galactose 10 mM (C) -0.3 -0.8 -3.8 -4.6 -4.3
carbon source D-Galactose 10 mM (C) -0.2 -0.6 -4.2 -4.5 -3.6
carbon source D-Galactose (C) -0.0 -0.5 -4.2 -3.1 -3.2
carbon source D-Galactose (C) -0.0 -0.3 -3.0 -4.1 -3.3
carbon source D-Galactose (C) -0.2 -0.7 -2.2 -2.5 -2.6
carbon source D-(+)-Galactosamine 10 mM (C) +0.1 +0.1 -3.8 -3.7 +1.5
carbon source D-(+)-Galactosamine 10 mM (C) +0.1 +0.3 -3.6 -3.4 +1.3
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.1 -0.5 -0.3 -4.0 +0.0
carbon source D-(+)-Galactosamine 10 mM (C) +0.1 +0.4 -3.8 -3.2 +1.5
carbon source D-(+)-Galactosamine (C) -0.3 -0.2 -2.4 -2.6 +0.7
carbon source D-(+)-Galactosamine (C) -0.1 +0.3 -3.1 -2.3 +0.5
carbon source D-Galacturonic Acid (C) 5 mM -0.1 -0.4 -1.3 -1.9 -0.8
carbon source D-(+)-Galactosamine (C) +0.1 -0.1 -2.4 -2.7 +0.8
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.3 -0.0 -0.1 -4.4 +0.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.7 -0.5 +0.0 -2.6 -0.4
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.4 -0.1 -0.6 -4.0 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.2 -0.4 -0.8 -1.4 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.2 -0.4 -0.2 -1.2 -0.5
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.2 -0.1 -0.4 -1.7 -0.2
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.0 +0.3 -0.0 -2.0 +0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.5 -0.3 -1.0 +1.3 +0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.1 -0.1 -0.9 +1.4 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.1 +0.6 -0.2 +1.4 +0.2
carbon source Inosine (C) +0.0 +0.3 -0.6 +2.0 +0.2
carbon source Inosine (C) +0.1 +0.4 -0.2 +2.0 -0.4
carbon source p-Coumaric (C) 5 mM +0.0 -0.3 +0.0 +2.0 +0.3
carbon source p-Coumaric (C) 5 mM +0.3 -0.3 -0.1 +2.3 -0.2
carbon source p-Coumaric (C) 5 mM -0.2 +0.5 -0.4 +2.4 -0.1
carbon source p-Coumaric (C) 5 mM +0.1 +0.1 -0.2 +2.2 +0.1
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