Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS00120 and PFLU_RS00125 are separated by 51 nucleotidesPFLU_RS00125 and PFLU_RS00130 are separated by 97 nucleotidesPFLU_RS00130 and PFLU_RS00135 are separated by 18 nucleotidesPFLU_RS00135 and PFLU_RS00140 are separated by 103 nucleotides PFLU_RS00120: PFLU_RS00120 - shikimate dehydrogenase, at 26,404 to 27,222 _RS00120 PFLU_RS00125: PFLU_RS00125 - SulP family inorganic anion transporter, at 27,274 to 28,842 _RS00125 PFLU_RS00130: PFLU_RS00130 - choline ABC transporter substrate-binding protein, at 28,940 to 29,854 _RS00130 PFLU_RS00135: PFLU_RS00135 - choline-sulfatase, at 29,873 to 31,387 _RS00135 PFLU_RS00140: PFLU_RS00140 - LysR family transcriptional regulator, at 31,491 to 32,441 _RS00140
Group Condition PFLU_RS00120 PFLU_RS00125 PFLU_RS00130 PFLU_RS00135 PFLU_RS00140
carbon source caffeic 2 mM (C) N.D. -0.1 +0.1 -0.5 -1.0
carbon source m-Inositol (C) N.D. -0.4 -0.2 -0.0 -0.4
carbon source p-Coumaric (C) N.D. -0.3 -0.2 -0.3 -0.2
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride N.D. -0.1 -0.2 -0.4 -0.1
carbon source p-Coumaric (C) N.D. -0.1 -0.2 -0.2 -0.3
carbon source Shikimic Acid (C) N.D. -0.3 -0.2 -0.1 -0.1
carbon source D-Galactose 10 mM (C) N.D. -0.2 +0.1 -0.3 -0.3
carbon source Xanthosine (C) N.D. +0.1 -0.2 -0.0 -0.4
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS N.D. -0.2 +0.2 +0.1 -0.7
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS N.D. -0.3 +0.1 -0.1 -0.2
nitrogen source NAG (N); with MOPS N.D. -0.3 +0.2 +0.0 -0.3
pH Growth at pH9 and (C) Trisodium citrate N.D. -0.4 -0.3 +0.2 +0.2
temperature Growth at 30C N.D. -0.2 -0.0 +0.2 -0.3
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS N.D. -0.1 -0.2 +0.2 -0.2
no stress control Glycine betaine (C)(N); with TAPS N.D. -0.2 -0.4 -0.1 +0.3
stress Betaine (C)(N); with MOPS; with chloride N.D. +0.2 +0.0 +0.1 -0.5
carbon source L-Valine 10 mM (C) N.D. -0.2 +0.2 +0.1 -0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride N.D. +0.1 -0.1 +0.3 -0.5
carbon source Ferulic Acid 2 mM (C) N.D. -0.2 +0.1 -0.2 +0.2
carbon source NAG (C) N.D. -0.5 +0.0 +0.1 +0.2
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride N.D. -0.2 -0.1 +0.4 -0.1
carbon source propionate 20 mM (C) N.D. -0.3 +0.1 +0.3 -0.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS N.D. -0.1 -0.4 +0.1 +0.3
carbon source p-Coumaric 2 mM (C) N.D. -0.2 +0.4 +0.3 -0.4
carbon and nitrogen source NAG carbon and (N) N.D. -0.3 +0.1 +0.4 -0.1
carbon source p-Coumaric (C) 5 mM N.D. -0.1 +0.3 +0.2 -0.2
carbon source Quinic Acid (C) N.D. +0.3 +0.3 +0.0 -0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride N.D. +0.3 -0.1 -0.2 +0.4
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS N.D. -0.1 +0.1 +0.2 +0.4
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS N.D. +0.2 +0.0 -0.1 +0.4
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