Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS00110 and PFLU_RS00115 are separated by 159 nucleotidesPFLU_RS00115 and PFLU_RS00120 overlap by 1 nucleotidesPFLU_RS00120 and PFLU_RS00125 are separated by 51 nucleotidesPFLU_RS00125 and PFLU_RS00130 are separated by 97 nucleotides PFLU_RS00110: PFLU_RS00110 - NADPH:quinone reductase, at 24,335 to 25,312 _RS00110 PFLU_RS00115: PFLU_RS00115 - oxygen-dependent coproporphyrinogen oxidase, at 25,472 to 26,404 _RS00115 PFLU_RS00120: PFLU_RS00120 - shikimate dehydrogenase, at 26,404 to 27,222 _RS00120 PFLU_RS00125: PFLU_RS00125 - SulP family inorganic anion transporter, at 27,274 to 28,842 _RS00125 PFLU_RS00130: PFLU_RS00130 - choline ABC transporter substrate-binding protein, at 28,940 to 29,854 _RS00130
Group Condition PFLU_RS00110 PFLU_RS00115 PFLU_RS00120 PFLU_RS00125 PFLU_RS00130
stress Betaine (C)(N); with TAPS; with chloride -0.4 N.D. N.D. -0.3 -0.2
pH Growth at pH8 and (C) Trisodium citrate -0.6 N.D. N.D. -0.0 -0.2
carbon source D-Glucose (C) -0.4 N.D. N.D. -0.2 -0.1
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.4 N.D. N.D. -0.2 -0.1
carbon source p-Coumaric (C) 5 mM -0.4 N.D. N.D. -0.3 -0.0
carbon source Shikimic Acid (C) -0.2 N.D. N.D. -0.3 -0.2
carbon source L-Carnitine (C) -0.4 N.D. N.D. -0.0 -0.2
carbon source m-Inositol (C) -0.1 N.D. N.D. -0.4 -0.2
stress Glucose (C) and Betaine (N); with TAPS; with chloride -0.3 N.D. N.D. -0.1 -0.2
no stress control L-Glutamine (C)(N); with TAPS -0.4 N.D. N.D. +0.0 -0.2
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.2 N.D. N.D. -0.1 -0.4
carbon source L-Arabinose (C) -0.3 N.D. N.D. -0.2 -0.2
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.4 N.D. N.D. -0.2 +0.0
carbon source D-Glucosamine Hydrochloride 10 mM (C) -0.6 N.D. N.D. +0.1 +0.0
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.4 N.D. N.D. -0.2 +0.0
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.5 N.D. N.D. -0.2 +0.2
pH Growth at pH9 and (C) Trisodium citrate +0.1 N.D. N.D. -0.4 -0.3
carbon source propionate 20 mM (C) -0.3 N.D. N.D. -0.2 +0.1
stress Betaine (C)(N); with TAPS; with chloride -0.6 N.D. N.D. +0.0 +0.1
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS -0.4 N.D. N.D. -0.1 +0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.5 N.D. N.D. -0.1 +0.3
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.3 N.D. N.D. +0.2 +0.0
temperature shift Temperature shift 30_to_34 -0.2 N.D. N.D. -0.2 +0.3
stress Betaine (C)(N); with MOPS; with chloride +0.3 N.D. N.D. -0.2 -0.1
carbon source p-Coumaric 2 mM (C) -0.1 N.D. N.D. -0.2 +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.2 N.D. N.D. +0.2 +0.2
stress L-Glutamine (C)(N); with TAPS; with chloride +0.4 N.D. N.D. +0.2 -0.2
carbon source Quinic Acid (C) -0.2 N.D. N.D. +0.3 +0.3
stress Betaine (C)(N); with MOPS; with chloride +0.4 N.D. N.D. +0.3 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.3 N.D. N.D. +0.0 +0.3
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