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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25-INTG
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS00025 and PFLU_RS00030 are separated by 286 nucleotides
PFLU_RS00030 and PFLU_RS00035 are separated by 3 nucleotides
PFLU_RS00035 and PFLU_RS00040 are separated by 182 nucleotides
PFLU_RS00040 and PFLU_RS00045 are separated by 82 nucleotides
PFLU_RS00025: PFLU_RS00025 - response regulator transcription factor, at 6,299 to 7,021
_RS00025
PFLU_RS00030: PFLU_RS00030 - hypothetical protein, at 7,308 to 8,240
_RS00030
PFLU_RS00035: PFLU_RS00035 - CHASE2 domain-containing protein, at 8,244 to 10,523
_RS00035
PFLU_RS00040: PFLU_RS00040 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 10,706 to 11,476
_RS00040
PFLU_RS00045: PFLU_RS00045 - D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase, at 11,559 to 12,092
_RS00045
Group
Condition
PFLU
_RS00025
PFLU
_RS00030
PFLU
_RS00035
PFLU
_RS00040
PFLU
_RS00045
stress
p-Coumaric (C) and Ammonium chloride (N); with TAPS
+0.4
-0.3
+0.1
-5.3
N.D.
stress
p-Coumaric (C) and Ammonium chloride (N); with TAPS
+0.2
-0.1
+0.1
-4.6
N.D.
stress
p-Coumaric (C) and Ammonium chloride (N); with TAPS
+0.2
+0.0
+0.1
-4.8
N.D.
stress
p-Coumaric (C) and Ammonium chloride (N); with TAPS
+0.2
-0.2
+0.2
-4.6
N.D.
stress
p-Coumaric (C) and Ammonium chloride (N); with TAPS
+0.2
+0.2
+0.3
-4.9
N.D.
stress
p-Coumaric (C) and Ammonium chloride (N); with TAPS
+0.2
-0.2
+0.1
-4.2
N.D.
stress
p-Coumaric (C) and Ammonium chloride (N); with TAPS
+0.4
-0.0
+0.0
-4.2
N.D.
stress
p-Coumaric (C) and Ammonium chloride (N); with TAPS
+0.3
-0.0
+0.3
-4.4
N.D.
carbon source
propionate (C)
-0.1
-0.1
-0.2
+3.7
N.D.
carbon source
propionate 20 mM (C)
+0.1
-0.3
+0.2
+3.6
N.D.
carbon source
propionate 20 mM (C)
-0.3
+0.0
-0.0
+4.0
N.D.
carbon source
Ferulic Acid 2 mM (C)
+0.2
-0.2
+0.1
+3.6
N.D.
carbon source
p-Coumaric 2 mM (C)
+0.2
-0.3
-0.1
+3.9
N.D.
carbon source
caffeic 2 mM (C)
+0.2
-0.2
-0.2
+3.9
N.D.
carbon source
propionate 20 mM (C)
-0.0
-0.2
+0.1
+3.9
N.D.
carbon source
L-Valine (C)
+0.3
-0.0
+0.3
+3.6
N.D.
carbon source
p-Coumaric (C)
+0.0
-0.1
+0.0
+4.3
N.D.
carbon source
p-Coumaric 2 mM (C)
+0.3
+0.2
+0.1
+3.9
N.D.
pH
Growth at pH8 and (C) Trisodium citrate
+0.1
+0.3
-0.2
+4.3
N.D.
carbon source
p-Coumaric (C)
+0.0
-0.2
-0.2
+4.9
N.D.
pH
Growth at pH9 and (C) Trisodium citrate
-0.0
+0.1
+0.4
+4.2
N.D.
no stress control
p-Coumaric (C) and Ammonium chloride (N); with MOPS
-0.1
-0.1
-0.1
+4.9
N.D.
pH
Growth at pH9 and (C) Trisodium citrate
+0.1
+0.2
+0.2
+4.2
N.D.
carbon source
Phloretic Acid 2 mM (C)
+0.3
-0.0
-0.1
+4.7
N.D.
carbon source
Phloretic Acid 2 mM (C)
+0.4
-0.2
+0.2
+4.4
N.D.
carbon source
p-Coumaric (C)
+0.0
-0.1
+0.0
+5.1
N.D.
carbon source
Phloretic Acid 2 mM (C)
-0.0
+0.1
+0.4
+4.7
N.D.
no stress control
p-Coumaric (C) and Ammonium chloride (N); with MOPS
+0.2
+0.1
-0.2
+5.1
N.D.
no stress control
p-Coumaric (C) and Ammonium chloride (N); with MOPS
+0.0
+0.3
+0.2
+4.9
N.D.
no stress control
p-Coumaric (C) and Ammonium chloride (N); with MOPS
+0.3
+0.3
+0.4
+5.0
N.D.
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