Fitness for 5 genes in Enterobacter sp. TBS_079

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500 ntMPMX20_04491 and MPMX20_04492 are separated by 144 nucleotidesMPMX20_04492 and MPMX20_04493 are separated by 6 nucleotidesMPMX20_04493 and MPMX20_04494 are separated by 48 nucleotidesMPMX20_04494 and MPMX20_04495 are separated by 85 nucleotides MPMX20_04491: MPMX20_04491 - Thioredoxin 1, at 4,696,415 to 4,696,744 _04491 MPMX20_04492: MPMX20_04492 - ATP-dependent RNA helicase RhlB, at 4,696,889 to 4,698,154 _04492 MPMX20_04493: MPMX20_04493 - Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase, at 4,698,161 to 4,699,645 _04493 MPMX20_04494: MPMX20_04494 - ATP-dependent DNA helicase Rep, at 4,699,694 to 4,701,718 _04494 MPMX20_04495: MPMX20_04495 - Peptidyl-prolyl cis-trans isomerase C, at 4,701,804 to 4,702,085 _04495
Group Condition MPMX20_04491 MPMX20_04492 MPMX20_04493 MPMX20_04494 MPMX20_04495
motility; outer cut Motility test in 1X LB; 1 day; outer cut; 0.3% agar -2.9 -0.7 -0.8 N.D. -0.2
mixed community AMD2036 coinoculated with AMD2587 on TSA to a starting OD of 0.001 -3.7 -0.3 +0.1 N.D. -0.5
carbon source m-Inositol (C) -1.8 -0.8 -1.1 N.D. -0.7
in planta Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4 -2.0 +0.0 -2.8 N.D. +0.5
motility; outer cut Motility test in 1X LB; 1 day; outer cut; 0.3% agar -2.4 -0.6 -0.8 N.D. -0.3
mixed community TSB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct -0.8 -0.9 -0.8 N.D. -1.4
carbon source acetate (C) -1.9 -0.4 -1.5 N.D. -0.0
carbon source D-Lactate (C) -1.2 -0.5 -1.5 N.D. -0.5
carbon source L-Glutamic (C) -2.5 +0.6 -1.7 N.D. +0.2
in planta Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4 -2.3 -0.1 -1.8 N.D. +0.9
carbon source D,L-Malic Acid (C) -0.3 -1.1 -0.3 N.D. -1.5
mixed community 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196 -1.0 -0.5 -1.6 N.D. -0.0
nitrogen source Gly-Glu (N) +0.2 -1.8 -1.6 N.D. +0.1
mixed community AMD2036 coinoculated with AMD2587 on TSA to a starting OD of 0.01 -1.6 -0.6 -0.3 N.D. -0.6
carbon source Xylitol (C) -1.4 +0.5 -0.3 N.D. -1.8
carbon source L-Histidine (C) -1.8 +0.4 -1.0 N.D. -0.4
carbon source L-Proline (C) -2.1 +0.4 -0.9 N.D. -0.1
mixed community M9 plate, 1:1 coculture with Brevibacillus agri TBS_043 -2.1 -0.3 -0.5 N.D. +0.4
carbon source Beta-Lactose (C) -1.2 -0.4 -1.3 N.D. +0.4
carbon source L-Glutamine (C) -2.6 +0.5 +0.1 N.D. -0.1
mixed community AMD2036 coinoculated with AMD2587 on LB to a starting OD of 0.001 -1.7 -0.6 -0.4 N.D. +0.7
carbon source L-Aspartic Acid (C) -1.8 +1.0 -1.0 N.D. -0.0
carbon source D-Arabinose (C) -1.5 +0.5 -1.0 N.D. +0.3
mixed community M9 plate, 1:1 coculture with Paenibacillus lautus TBS_090 -1.6 +0.1 -0.7 N.D. +0.9
nitrogen source Thymine (N) +0.4 +0.4 -2.4 N.D. +0.5
carbon source Fumarate (C) -2.4 +1.6 -0.7 N.D. +0.5
mixed community TSB plate, 1:1 coculture with Brevibacillus agri TBS_043 -0.7 -0.7 -0.5 N.D. +1.6
mixed community 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_133 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct -1.0 +1.5 +0.3 N.D. -0.3
mixed community TSB plate, Mixed culture; Bacillus subtilis TBS_111 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct -0.2 -0.3 -0.1 N.D. +3.0
mixed community 0.1X LB plate, Mixed culture; Pseudomonas lini TBS_028 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct -0.7 +1.9 +1.6 N.D. -0.2
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