Fitness for 5 genes in Enterobacter sp. TBS_079

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500 ntMPMX20_04431 and MPMX20_04432 are separated by 356 nucleotidesMPMX20_04432 and MPMX20_04433 are separated by 10 nucleotidesMPMX20_04433 and MPMX20_04434 are separated by 41 nucleotidesMPMX20_04434 and MPMX20_04435 overlap by 1 nucleotides MPMX20_04431: MPMX20_04431 - 16S ribosomal RNA, at 4,631,903 to 4,633,438 _04431 MPMX20_04432: MPMX20_04432 - Protoporphyrinogen IX dehydrogenase [menaquinone], at 4,633,795 to 4,634,340 _04432 MPMX20_04433: MPMX20_04433 - Trk system potassium uptake protein TrkH, at 4,634,351 to 4,635,802 _04433 MPMX20_04434: MPMX20_04434 - IMPACT family member YigZ, at 4,635,844 to 4,636,458 _04434 MPMX20_04435: MPMX20_04435 - Xaa-Pro dipeptidase, at 4,636,458 to 4,637,789 _04435
Group Condition MPMX20_04431 MPMX20_04432 MPMX20_04433 MPMX20_04434 MPMX20_04435
carbon source Fumarate (C) N.D. N.D. -3.2 -0.2 +0.2
carbon source D-Lactate (C) N.D. N.D. -3.0 -0.1 +0.1
carbon source L-Proline (C) N.D. N.D. -3.0 +0.0 +0.2
carbon source succinate (C) N.D. N.D. -2.8 -0.0 +0.2
carbon source L-Glutamic (C) N.D. N.D. -2.5 -0.2 +0.3
carbon source a-Ketoglutaric (C) N.D. N.D. -2.2 +0.0 +0.1
motility; outer cut Motility test in 1X LB; 1 day; outer cut; 0.3% agar N.D. N.D. -1.6 -0.4 -0.1
mixed community M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031 N.D. N.D. -0.4 -1.3 -0.3
carbon source L-Aspartic Acid (C) N.D. N.D. -2.2 -0.0 +0.2
motility; outer cut Motility test in 1X LB; 1 day; outer cut; 0.3% agar N.D. N.D. -1.6 -0.0 -0.2
carbon source acetate (C) N.D. N.D. -1.9 -0.1 +0.2
carbon source D-Alanine (C) N.D. N.D. -1.9 +0.2 -0.1
mixed community M9 plate, 1:1 coculture with Rhodococcus aetherivorans MH2 N.D. N.D. -0.8 -0.1 -0.8
carbon source L-Histidine (C) N.D. N.D. -1.7 +0.0 +0.1
nitrogen source Thymine (N) N.D. N.D. -1.6 +0.1 -0.0
nitrogen source Thymidine (N) N.D. N.D. -1.3 -0.3 +0.2
carbon source Trisodium citrate (C) N.D. N.D. -1.3 -0.3 +0.2
carbon source L-Asparagine (C) N.D. N.D. -1.7 +0.3 +0.1
carbon source L-Arginine (C) N.D. N.D. -1.5 +0.1 +0.2
carbon source Glucuronamide (C) N.D. N.D. -1.6 +0.1 +0.5
in planta Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4 N.D. N.D. -1.4 +0.3 +0.0
carbon source D-Serine (C) N.D. N.D. -1.4 +0.2 +0.2
carbon source Beta-Lactose (C) N.D. N.D. -1.6 +0.6 +0.2
mixed community 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_055 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct N.D. N.D. -0.9 +0.8 -0.3
in planta Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4 N.D. N.D. -1.1 +0.2 +0.5
mixed community TSB plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct N.D. N.D. -0.9 +0.8 -0.2
carbon source L-Threonine (C) N.D. N.D. -1.0 +0.5 +0.2
carbon source L-tyrosine (C) N.D. N.D. -0.7 +0.6 +0.4
carbon source D-Sorbitol (C) N.D. N.D. -0.8 +0.4 +0.7
mixed community 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_133 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct N.D. N.D. -0.2 -0.3 +1.2
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